miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2748 3' -51.8 NC_001491.2 + 71571 0.66 0.981764
Target:  5'- uGGUguugCGGAGGauUCAUAGCGCCCUu -3'
miRNA:   3'- gUCGaa--GUCUUCgcGGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 70883 0.68 0.945818
Target:  5'- gCAGCUUUAGcaucagcGCGUCA-AGCGCCCa -3'
miRNA:   3'- -GUCGAAGUCuu-----CGCGGUaUUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 68730 0.68 0.958372
Target:  5'- -uGCagCGGAgAGCGCCGacgccgccACGCCCCa -3'
miRNA:   3'- guCGaaGUCU-UCGCGGUau------UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 67527 0.66 0.985625
Target:  5'- gAGCUggAGAauAGaCGCCGgacaGCCCCg -3'
miRNA:   3'- gUCGAagUCU--UC-GCGGUauugUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 61537 0.66 0.977174
Target:  5'- aCGGCaacCAGAGGa--CAUGACGCCUCg -3'
miRNA:   3'- -GUCGaa-GUCUUCgcgGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 54883 0.68 0.945818
Target:  5'- gAGaCUUCGGAgAGCGCCucacacgAugACCCa -3'
miRNA:   3'- gUC-GAAGUCU-UCGCGGua-----UugUGGGg -5'
2748 3' -51.8 NC_001491.2 + 53216 0.68 0.941133
Target:  5'- cCGGCgUCGGGAGgGCCGUGggcuaccagggaGCaaagguucuagACCCCg -3'
miRNA:   3'- -GUCGaAGUCUUCgCGGUAU------------UG-----------UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 49698 0.66 0.987303
Target:  5'- gCGGCcacggUAGAuuguuguuuGGgGCCA-AACACCCCa -3'
miRNA:   3'- -GUCGaa---GUCU---------UCgCGGUaUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 47658 0.67 0.965536
Target:  5'- -cGCUUCAGAGGUuuuuGCCAgccucgccAGCAUCuCCa -3'
miRNA:   3'- guCGAAGUCUUCG----CGGUa-------UUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 47400 0.66 0.977174
Target:  5'- aCAGCaaCAGcAGGCGCCgGUGGCGuucaaCCCa -3'
miRNA:   3'- -GUCGaaGUC-UUCGCGG-UAUUGUg----GGG- -5'
2748 3' -51.8 NC_001491.2 + 39173 0.68 0.945818
Target:  5'- -cGCcUCAGAuagcAGCGCUGcccACGCCCCc -3'
miRNA:   3'- guCGaAGUCU----UCGCGGUau-UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 34420 0.7 0.893085
Target:  5'- aCGGCcgucgcaugggCAGAgAGCGCCccggagcuuaAUAGCGCCCCc -3'
miRNA:   3'- -GUCGaa---------GUCU-UCGCGG----------UAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 31961 0.66 0.983781
Target:  5'- gGGag-CGGAcGCGCCAgagccGCACCCa -3'
miRNA:   3'- gUCgaaGUCUuCGCGGUau---UGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 30588 0.67 0.974583
Target:  5'- -uGCUcUAGggGUGUUAUGGCGCUUCu -3'
miRNA:   3'- guCGAaGUCuuCGCGGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 30210 0.68 0.945818
Target:  5'- uGGCcuucaucauagUCAGGAGUGCUGUAAUgaccggaaGCCCCu -3'
miRNA:   3'- gUCGa----------AGUCUUCGCGGUAUUG--------UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 19572 0.68 0.940651
Target:  5'- gAGUUUUAGAguuggggGGUGCCGgUAGCGgCCCu -3'
miRNA:   3'- gUCGAAGUCU-------UCGCGGU-AUUGUgGGG- -5'
2748 3' -51.8 NC_001491.2 + 17745 0.68 0.958372
Target:  5'- -cGCUggagCAuGGGgGCCAUGACAUCCg -3'
miRNA:   3'- guCGAa---GUcUUCgCGGUAUUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 16767 0.66 0.985625
Target:  5'- uUAGCU---GAAGCGCCAU--CGCCUg -3'
miRNA:   3'- -GUCGAaguCUUCGCGGUAuuGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 14488 0.67 0.965536
Target:  5'- uGGCUggCGuGAAgGCGCCAgGAUACCUCc -3'
miRNA:   3'- gUCGAa-GU-CUU-CGCGGUaUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 8956 0.66 0.985625
Target:  5'- -cGCUggaUCAGucGCGUgGUGACGagcucuCCCCg -3'
miRNA:   3'- guCGA---AGUCuuCGCGgUAUUGU------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.