Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2748 | 3' | -51.8 | NC_001491.2 | + | 2584 | 0.84 | 0.233458 |
Target: 5'- aCAGCUguuuaaaaAGAAGCGCCAgacGCGCCCCu -3' miRNA: 3'- -GUCGAag------UCUUCGCGGUau-UGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 31961 | 0.66 | 0.983781 |
Target: 5'- gGGag-CGGAcGCGCCAgagccGCACCCa -3' miRNA: 3'- gUCgaaGUCUuCGCGGUau---UGUGGGg -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 73016 | 0.66 | 0.983781 |
Target: 5'- gGGCUgaauacuucCAGGAG-GCUAaauuGCACCCCg -3' miRNA: 3'- gUCGAa--------GUCUUCgCGGUau--UGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 137459 | 0.66 | 0.981764 |
Target: 5'- uGGUguuaCGGAAacacgcGUGCCAagAACGCCCCa -3' miRNA: 3'- gUCGaa--GUCUU------CGCGGUa-UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 138204 | 0.66 | 0.981764 |
Target: 5'- -cGCcugaagUAGGAGCGCCcgAGCAUgcaCCCg -3' miRNA: 3'- guCGaa----GUCUUCGCGGuaUUGUG---GGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 147973 | 0.66 | 0.981764 |
Target: 5'- gGGCcgcCAGcAGCGCCGaGAguCCCCc -3' miRNA: 3'- gUCGaa-GUCuUCGCGGUaUUguGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 71571 | 0.66 | 0.981764 |
Target: 5'- uGGUguugCGGAGGauUCAUAGCGCCCUu -3' miRNA: 3'- gUCGaa--GUCUUCgcGGUAUUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 115439 | 0.66 | 0.979564 |
Target: 5'- -cGCUUCGGGgagcuGGCgGCCA--GCGgCCCg -3' miRNA: 3'- guCGAAGUCU-----UCG-CGGUauUGUgGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 2763 | 0.66 | 0.979564 |
Target: 5'- gAGUUUCAGGcauaCGCCcccAUACCCCg -3' miRNA: 3'- gUCGAAGUCUuc--GCGGuauUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 4010 | 0.66 | 0.983781 |
Target: 5'- aUAGCgUguGuAGCGCCccguuUAGCGCCgCCa -3' miRNA: 3'- -GUCGaAguCuUCGCGGu----AUUGUGG-GG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 67527 | 0.66 | 0.985625 |
Target: 5'- gAGCUggAGAauAGaCGCCGgacaGCCCCg -3' miRNA: 3'- gUCGAagUCU--UC-GCGGUauugUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 8956 | 0.66 | 0.985625 |
Target: 5'- -cGCUggaUCAGucGCGUgGUGACGagcucuCCCCg -3' miRNA: 3'- guCGA---AGUCuuCGCGgUAUUGU------GGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 83728 | 0.66 | 0.987303 |
Target: 5'- uGGCg-CAGGuuuuCGCCAUucacaAACGCCCCu -3' miRNA: 3'- gUCGaaGUCUuc--GCGGUA-----UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 124477 | 0.66 | 0.987303 |
Target: 5'- -----cCAGAGGgGCCAggcaGCCCCg -3' miRNA: 3'- gucgaaGUCUUCgCGGUauugUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 96705 | 0.66 | 0.987143 |
Target: 5'- -uGCUUUuGggGCGaCCcgagagcgcgguaGUGACGCCUCg -3' miRNA: 3'- guCGAAGuCuuCGC-GG-------------UAUUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 125074 | 0.66 | 0.986651 |
Target: 5'- gCGGCga-GGAGGCGCCGagaggcgagcguaAGCACCUg -3' miRNA: 3'- -GUCGaagUCUUCGCGGUa------------UUGUGGGg -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 114302 | 0.66 | 0.985625 |
Target: 5'- cCGGCgUguGGAGCugGUgGUugAGCACCCCg -3' miRNA: 3'- -GUCGaAguCUUCG--CGgUA--UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 16767 | 0.66 | 0.985625 |
Target: 5'- uUAGCU---GAAGCGCCAU--CGCCUg -3' miRNA: 3'- -GUCGAaguCUUCGCGGUAuuGUGGGg -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 107442 | 0.66 | 0.985625 |
Target: 5'- gGGCUcgucuucaugcUguGggGCGCCc--ACGCCCa -3' miRNA: 3'- gUCGA-----------AguCuuCGCGGuauUGUGGGg -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 135347 | 0.66 | 0.985625 |
Target: 5'- -uGCccagCAG-AGUGCUAUGGCACCUa -3' miRNA: 3'- guCGaa--GUCuUCGCGGUAUUGUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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