miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2748 5' -52.6 NC_001491.2 + 91939 0.66 0.976792
Target:  5'- -uGGGGUGgc-AGCCUCagaGCGGGcGACa -3'
miRNA:   3'- ccCCCCACaauUUGGAGa--CGUCU-CUG- -5'
2748 5' -52.6 NC_001491.2 + 112996 0.66 0.974194
Target:  5'- cGGGGGUG--AGACgCgggCUGgGGGGGCc -3'
miRNA:   3'- cCCCCCACaaUUUG-Ga--GACgUCUCUG- -5'
2748 5' -52.6 NC_001491.2 + 19560 0.66 0.971392
Target:  5'- uGGGGGGUGccggUAGcgGCCcUUGgGGAGgACa -3'
miRNA:   3'- -CCCCCCACa---AUU--UGGaGACgUCUC-UG- -5'
2748 5' -52.6 NC_001491.2 + 120514 0.66 0.968376
Target:  5'- uGGGGGGaGggGcACCUCUGUAcacgcGuGGCa -3'
miRNA:   3'- -CCCCCCaCaaUuUGGAGACGU-----CuCUG- -5'
2748 5' -52.6 NC_001491.2 + 55656 0.67 0.95799
Target:  5'- cGGGcGGccGUgAGACUaaccgugcccgUCUGCAGAGACg -3'
miRNA:   3'- cCCC-CCa-CAaUUUGG-----------AGACGUCUCUG- -5'
2748 5' -52.6 NC_001491.2 + 138784 0.67 0.949032
Target:  5'- cGGGGGUGUcuucgggguUUUCUGCAGAcACg -3'
miRNA:   3'- cCCCCCACAauuu-----GGAGACGUCUcUG- -5'
2748 5' -52.6 NC_001491.2 + 60614 0.69 0.913142
Target:  5'- aGGGccucucuguugcuGGUGUcuggguccgUGAGCCUCUGCAGGaGCg -3'
miRNA:   3'- cCCC-------------CCACA---------AUUUGGAGACGUCUcUG- -5'
2748 5' -52.6 NC_001491.2 + 72061 0.7 0.865457
Target:  5'- cGGGGGGuUGUUAAccgaGCUuaUCUGCAGGc-- -3'
miRNA:   3'- -CCCCCC-ACAAUU----UGG--AGACGUCUcug -5'
2748 5' -52.6 NC_001491.2 + 130083 0.71 0.841332
Target:  5'- --uGGGUGUggauguugGAGCCUCUGUGGuAGACu -3'
miRNA:   3'- cccCCCACAa-------UUUGGAGACGUC-UCUG- -5'
2748 5' -52.6 NC_001491.2 + 129951 0.72 0.78789
Target:  5'- aGGGGGUGgacguggAAGCCcCUGUAGuAGAUg -3'
miRNA:   3'- cCCCCCACaa-----UUUGGaGACGUC-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.