miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27481 3' -55.5 NC_005869.1 + 8354 0.68 0.429946
Target:  5'- uGCAG-GAGGuCGggggGcGGGCGCAGGaGGUg -3'
miRNA:   3'- -CGUCuCUCUuGUa---C-CUCGCGUCC-CCG- -5'
27481 3' -55.5 NC_005869.1 + 3064 0.68 0.429946
Target:  5'- gGCGGgaGGAGAacacauacagaaACAUGGAGCGggugguguacCGGGuGGCc -3'
miRNA:   3'- -CGUC--UCUCU------------UGUACCUCGC----------GUCC-CCG- -5'
27481 3' -55.5 NC_005869.1 + 9361 0.69 0.400712
Target:  5'- ----cGGGGACggGGGGCGCAGGccggggacGGCg -3'
miRNA:   3'- cgucuCUCUUGuaCCUCGCGUCC--------CCG- -5'
27481 3' -55.5 NC_005869.1 + 1836 0.69 0.388444
Target:  5'- uGCuGGAGgcgcgaaugauggcGGAGCA-GGuGCgGCAGGGGCu -3'
miRNA:   3'- -CG-UCUC--------------UCUUGUaCCuCG-CGUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 17816 0.69 0.372777
Target:  5'- cGCGGuGGGuuccGCGUGGcgccucGGCGCAGcGGCg -3'
miRNA:   3'- -CGUCuCUCu---UGUACC------UCGCGUCcCCG- -5'
27481 3' -55.5 NC_005869.1 + 20917 0.69 0.366452
Target:  5'- cCAGAGAGAGCAgggaGGAugcccgggacgggacGCGCGagaggccGGGGUg -3'
miRNA:   3'- cGUCUCUCUUGUa---CCU---------------CGCGU-------CCCCG- -5'
27481 3' -55.5 NC_005869.1 + 15257 0.69 0.363764
Target:  5'- cGCGGccGGAcgccgacgcACA-GGAGcCGCGGGGGCc -3'
miRNA:   3'- -CGUCucUCU---------UGUaCCUC-GCGUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 19248 0.69 0.363764
Target:  5'- uGUAGA-AGGcCcgGGAGCGCAGcGGCa -3'
miRNA:   3'- -CGUCUcUCUuGuaCCUCGCGUCcCCG- -5'
27481 3' -55.5 NC_005869.1 + 10918 0.69 0.363764
Target:  5'- --uGAGGGGcGCGUGGAGgagGCGGGGGg -3'
miRNA:   3'- cguCUCUCU-UGUACCUCg--CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 3680 0.69 0.354903
Target:  5'- uGCGG-GAGGugGUGGAGauacaGCuGcGGGCc -3'
miRNA:   3'- -CGUCuCUCUugUACCUCg----CGuC-CCCG- -5'
27481 3' -55.5 NC_005869.1 + 2091 0.69 0.354903
Target:  5'- gGUGGAGAGGggaGCggGGAGgagGCGGGGGg -3'
miRNA:   3'- -CGUCUCUCU---UGuaCCUCg--CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 4219 0.7 0.329244
Target:  5'- uGCAGguaaagccacuGGAGGGC-UGG-GUGCGGGGGg -3'
miRNA:   3'- -CGUC-----------UCUCUUGuACCuCGCGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 20707 0.7 0.329244
Target:  5'- cCAGGGAgGAGCG-GGAgGCGCGGcGGCg -3'
miRNA:   3'- cGUCUCU-CUUGUaCCU-CGCGUCcCCG- -5'
27481 3' -55.5 NC_005869.1 + 5434 0.71 0.297203
Target:  5'- aGguGAGGGGcgGUGGcAGCgGCGGGGcGCg -3'
miRNA:   3'- -CguCUCUCUugUACC-UCG-CGUCCC-CG- -5'
27481 3' -55.5 NC_005869.1 + 1844 0.71 0.28958
Target:  5'- cGCAGAcGAGcAugAUGGAGCagcgGCAGGaGGa -3'
miRNA:   3'- -CGUCU-CUC-UugUACCUCG----CGUCC-CCg -5'
27481 3' -55.5 NC_005869.1 + 7118 0.71 0.265516
Target:  5'- cGCGGuGAuacagacagcucuuGGugAgGGAGCGCAGGGuGCg -3'
miRNA:   3'- -CGUCuCU--------------CUugUaCCUCGCGUCCC-CG- -5'
27481 3' -55.5 NC_005869.1 + 31169 0.71 0.265516
Target:  5'- gGCAGGcGAGAcgagGGAGCGaugugcaccgugcuCAGGGGCa -3'
miRNA:   3'- -CGUCU-CUCUuguaCCUCGC--------------GUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 8205 0.72 0.240489
Target:  5'- gGCGGAGGGGGaaggGGAG-GC-GGGGCg -3'
miRNA:   3'- -CGUCUCUCUUgua-CCUCgCGuCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 7894 0.72 0.240489
Target:  5'- cCGGAGGGGcgGCAUGGuGgGCGguggacGGGGCg -3'
miRNA:   3'- cGUCUCUCU--UGUACCuCgCGU------CCCCG- -5'
27481 3' -55.5 NC_005869.1 + 15314 0.72 0.234072
Target:  5'- aGCGGAgGAGGugGUGGuggugagcggcGGCG-GGGGGCg -3'
miRNA:   3'- -CGUCU-CUCUugUACC-----------UCGCgUCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.