Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27481 | 5' | -60.6 | NC_005869.1 | + | 32289 | 1.1 | 0.000138 |
Target: 5'- cCGGCCCGUGCGCUCGCUCAACUCCCCc -3' miRNA: 3'- -GCCGGGCACGCGAGCGAGUUGAGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 8308 | 0.77 | 0.051525 |
Target: 5'- gGGCCCGgcgGCGCggGC-CAGCUCCaCCg -3' miRNA: 3'- gCCGGGCa--CGCGagCGaGUUGAGG-GG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 23098 | 0.77 | 0.056193 |
Target: 5'- gGGCCC--GCGCcgCGCUC-ACUCCCCc -3' miRNA: 3'- gCCGGGcaCGCGa-GCGAGuUGAGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 331 | 0.74 | 0.091413 |
Target: 5'- cCGGCCCGcucgcgGUGUUCGCUCAcACUCgUCu -3' miRNA: 3'- -GCCGGGCa-----CGCGAGCGAGU-UGAGgGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 17443 | 0.71 | 0.146923 |
Target: 5'- uGGCCCG-GCGCcCGCggCGGuuccggugcCUCCCCc -3' miRNA: 3'- gCCGGGCaCGCGaGCGa-GUU---------GAGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 22422 | 0.71 | 0.159474 |
Target: 5'- aGGCCUGcuacGCGUuccUCGCUCGccACUCCgCCu -3' miRNA: 3'- gCCGGGCa---CGCG---AGCGAGU--UGAGG-GG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 25481 | 0.7 | 0.177712 |
Target: 5'- aCGcGCCCGUGCccCUgGCcCAGCUgCCCg -3' miRNA: 3'- -GC-CGGGCACGc-GAgCGaGUUGAgGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 18069 | 0.69 | 0.192584 |
Target: 5'- gGGCgCGUGCccagcaccaGCaccucgucgcugUCGCUCAAC-CCCCg -3' miRNA: 3'- gCCGgGCACG---------CG------------AGCGAGUUGaGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 20649 | 0.69 | 0.197778 |
Target: 5'- aCGGCC--UGCGCUacCGCUCccAGCUCCUg -3' miRNA: 3'- -GCCGGgcACGCGA--GCGAG--UUGAGGGg -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 32005 | 0.69 | 0.2141 |
Target: 5'- cCGGCCCuucgagccUGCGCcCGCUCG-CUUCCa -3' miRNA: 3'- -GCCGGGc-------ACGCGaGCGAGUuGAGGGg -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 23527 | 0.68 | 0.225614 |
Target: 5'- uGGCagCUGaucuUGCGCUCGUUCAGCcaggcuugggCCCCg -3' miRNA: 3'- gCCG--GGC----ACGCGAGCGAGUUGa---------GGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 16754 | 0.68 | 0.225614 |
Target: 5'- cCGcGCCCGagGUGCU-GCcCAGcCUCCCCg -3' miRNA: 3'- -GC-CGGGCa-CGCGAgCGaGUU-GAGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 10711 | 0.68 | 0.231565 |
Target: 5'- gGGCCUG-GCGCggcugucgggCGCggCGGC-CCCCg -3' miRNA: 3'- gCCGGGCaCGCGa---------GCGa-GUUGaGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 31979 | 0.68 | 0.231565 |
Target: 5'- gCGGCCCG-GCuGUUgCGCaCGGC-CCCCa -3' miRNA: 3'- -GCCGGGCaCG-CGA-GCGaGUUGaGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 24914 | 0.68 | 0.237649 |
Target: 5'- -uGCUgGUGCGCcgCGCgagcCcACUCCCCg -3' miRNA: 3'- gcCGGgCACGCGa-GCGa---GuUGAGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 9292 | 0.68 | 0.250216 |
Target: 5'- aGGuCCUGguugGCGCagGC-CGGCUCCUCg -3' miRNA: 3'- gCC-GGGCa---CGCGagCGaGUUGAGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 23897 | 0.68 | 0.256703 |
Target: 5'- aGG-CCGcGCGCUUGCggc-CUCCCCc -3' miRNA: 3'- gCCgGGCaCGCGAGCGaguuGAGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 16190 | 0.67 | 0.263326 |
Target: 5'- gGGCCCGccC-CUCGC-CGAC-CCCCg -3' miRNA: 3'- gCCGGGCacGcGAGCGaGUUGaGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 17496 | 0.67 | 0.270088 |
Target: 5'- gCGcGCCgCGUGCGcCUCGC---GC-CCCCa -3' miRNA: 3'- -GC-CGG-GCACGC-GAGCGaguUGaGGGG- -5' |
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27481 | 5' | -60.6 | NC_005869.1 | + | 27892 | 0.67 | 0.298535 |
Target: 5'- aGGCCaCGgucUGCGCU---UCAGcCUCCCCa -3' miRNA: 3'- gCCGG-GC---ACGCGAgcgAGUU-GAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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