Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27482 | 5' | -52.5 | NC_005869.1 | + | 1594 | 0.73 | 0.329645 |
Target: 5'- -cGGGUGUACUcCCAGCGacaUGAgCGCg -3' miRNA: 3'- gaCCUACAUGA-GGUCGUgg-ACUaGCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 9676 | 0.68 | 0.609391 |
Target: 5'- -aGGAUgGUACUCUGGCGCagcaGGUgGCg -3' miRNA: 3'- gaCCUA-CAUGAGGUCGUGga--CUAgCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 10476 | 0.66 | 0.717985 |
Target: 5'- cCUGGA-GUGCuUCCGGCGCggggcccaagccuggCUGAacgagCGCa -3' miRNA: 3'- -GACCUaCAUG-AGGUCGUG---------------GACUa----GCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 10890 | 0.66 | 0.70208 |
Target: 5'- -gGGAgcgaGUGCUCCAGC-CCgaggacuuUGAggggCGCg -3' miRNA: 3'- gaCCUa---CAUGAGGUCGuGG--------ACUa---GCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 16675 | 0.77 | 0.185961 |
Target: 5'- cCUGGGUGUGCggugggCUAGCACgCUGGUUGg -3' miRNA: 3'- -GACCUACAUGa-----GGUCGUG-GACUAGCg -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 18065 | 0.73 | 0.32124 |
Target: 5'- cCUGGGgcgcGUGCccagcaCCAGCACCUcGUCGCu -3' miRNA: 3'- -GACCUa---CAUGa-----GGUCGUGGAcUAGCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 20650 | 0.67 | 0.63965 |
Target: 5'- cCUGGGcgcgcGUGCgccaggugaacagCCGGCugCUGAUgGCg -3' miRNA: 3'- -GACCUa----CAUGa------------GGUCGugGACUAgCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 23867 | 0.67 | 0.66754 |
Target: 5'- cCUGcucGUGgGCUaCCAGCACCUGcugCGCc -3' miRNA: 3'- -GACc--UACaUGA-GGUCGUGGACua-GCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 24344 | 0.66 | 0.70208 |
Target: 5'- -cGGAcGUGCUgCAGCgccACCUGcugCGCc -3' miRNA: 3'- gaCCUaCAUGAgGUCG---UGGACua-GCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 26651 | 0.66 | 0.747001 |
Target: 5'- cCUGGA-GUACUgcgCCGGagacggaGCCUGcgUGCg -3' miRNA: 3'- -GACCUaCAUGA---GGUCg------UGGACuaGCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 30265 | 0.73 | 0.346939 |
Target: 5'- aUGG-UGUucGCUCCAGCGCCgGG-CGCc -3' miRNA: 3'- gACCuACA--UGAGGUCGUGGaCUaGCG- -5' |
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27482 | 5' | -52.5 | NC_005869.1 | + | 32477 | 1.12 | 0.000589 |
Target: 5'- cCUGGAUGUACUCCAGCACCUGAUCGCu -3' miRNA: 3'- -GACCUACAUGAGGUCGUGGACUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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