miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27483 5' -51.1 NC_005869.1 + 15254 0.66 0.830334
Target:  5'- --aGCcgCGGCCGGAcgccgacgcacaGGAGCcgCGGGGg -3'
miRNA:   3'- gagCGa-GUCGGCUU------------UCUUGaaGUCCC- -5'
27483 5' -51.1 NC_005869.1 + 2068 0.66 0.827453
Target:  5'- aUCGCcgcCGGcCCGggGGAGCggguggagaggggagCGGGGa -3'
miRNA:   3'- gAGCGa--GUC-GGCuuUCUUGaa-------------GUCCC- -5'
27483 5' -51.1 NC_005869.1 + 9959 0.66 0.787172
Target:  5'- -gCGCUCGGCC--AGGAuggccugcgcaugcGCUgCAGGGa -3'
miRNA:   3'- gaGCGAGUCGGcuUUCU--------------UGAaGUCCC- -5'
27483 5' -51.1 NC_005869.1 + 10898 0.67 0.7798
Target:  5'- -gUGCUcCAGCCc-GAGGACUUUgAGGGg -3'
miRNA:   3'- gaGCGA-GUCGGcuUUCUUGAAG-UCCC- -5'
27483 5' -51.1 NC_005869.1 + 33833 0.67 0.769123
Target:  5'- -cCGCUCGGCCccgccccgcGGAGGAccGCccCAGGGc -3'
miRNA:   3'- gaGCGAGUCGG---------CUUUCU--UGaaGUCCC- -5'
27483 5' -51.1 NC_005869.1 + 19311 0.67 0.736191
Target:  5'- uCUgGCUgGGCCGGAAGGucaccggguccuGCaUCAGGu -3'
miRNA:   3'- -GAgCGAgUCGGCUUUCU------------UGaAGUCCc -5'
27483 5' -51.1 NC_005869.1 + 16565 0.68 0.679123
Target:  5'- -gCGCggGGCUGGAGGGGCUg-GGGGa -3'
miRNA:   3'- gaGCGagUCGGCUUUCUUGAagUCCC- -5'
27483 5' -51.1 NC_005869.1 + 6602 0.68 0.679123
Target:  5'- cCUCGUUgAGCUGGAugccucugccgcGGAGggUCAGGGc -3'
miRNA:   3'- -GAGCGAgUCGGCUU------------UCUUgaAGUCCC- -5'
27483 5' -51.1 NC_005869.1 + 2220 0.69 0.655849
Target:  5'- -aUGCUuCAGCCGggGGAugaUCuGGGg -3'
miRNA:   3'- gaGCGA-GUCGGCuuUCUugaAGuCCC- -5'
27483 5' -51.1 NC_005869.1 + 22960 0.69 0.655849
Target:  5'- -cCGCUCAGCgCGAAGGGGgUgaucuugCAGGu -3'
miRNA:   3'- gaGCGAGUCG-GCUUUCUUgAa------GUCCc -5'
27483 5' -51.1 NC_005869.1 + 30101 0.74 0.363726
Target:  5'- uCUUGCUCGcGCCGuagcuGAGccGCUUCGGGGu -3'
miRNA:   3'- -GAGCGAGU-CGGCu----UUCu-UGAAGUCCC- -5'
27483 5' -51.1 NC_005869.1 + 32963 1.11 0.001184
Target:  5'- uCUCGCUCAGCCGAAAGAACUUCAGGGu -3'
miRNA:   3'- -GAGCGAGUCGGCUUUCUUGAAGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.