miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27485 5' -55.3 NC_005872.1 + 23628 0.66 0.554916
Target:  5'- uCCCCCACCUCUACGcucacgccACCcCAUGc -3'
miRNA:   3'- -GGGGGUGGAGGUGUucc-----UGGaGUAUc -5'
27485 5' -55.3 NC_005872.1 + 7179 0.66 0.554916
Target:  5'- -aCCC-CCUCC-CAAGGAgCUUuUAGa -3'
miRNA:   3'- ggGGGuGGAGGuGUUCCUgGAGuAUC- -5'
27485 5' -55.3 NC_005872.1 + 464 0.67 0.478148
Target:  5'- gCCCCCACCUCCcccACAAGaaaaGCCa----- -3'
miRNA:   3'- -GGGGGUGGAGG---UGUUCc---UGGaguauc -5'
27485 5' -55.3 NC_005872.1 + 23464 0.68 0.426643
Target:  5'- gCCCCUagucaGCCcCCcgauuuCAAGGuCCUCGUAGa -3'
miRNA:   3'- -GGGGG-----UGGaGGu-----GUUCCuGGAGUAUC- -5'
27485 5' -55.3 NC_005872.1 + 6090 0.68 0.416741
Target:  5'- aCCCUaaugcguuuaACCUCCuuAAGGGCCUCc--- -3'
miRNA:   3'- gGGGG----------UGGAGGugUUCCUGGAGuauc -5'
27485 5' -55.3 NC_005872.1 + 3193 0.68 0.397365
Target:  5'- gCCCUCaaGCCUCCGCAuaaccuCCUCAUAa -3'
miRNA:   3'- -GGGGG--UGGAGGUGUuccu--GGAGUAUc -5'
27485 5' -55.3 NC_005872.1 + 27716 0.68 0.387897
Target:  5'- --aUCGCCUCCGCAuuagAGGACCUauUAGg -3'
miRNA:   3'- gggGGUGGAGGUGU----UCCUGGAguAUC- -5'
27485 5' -55.3 NC_005872.1 + 16764 0.69 0.342832
Target:  5'- uCCUcagCCGCCUCCACAaaGGGaguGCCUUGUAc -3'
miRNA:   3'- -GGG---GGUGGAGGUGU--UCC---UGGAGUAUc -5'
27485 5' -55.3 NC_005872.1 + 2756 0.71 0.271558
Target:  5'- aCCCCagagcgCGCCUCCugAgaAGGGCCUUAa-- -3'
miRNA:   3'- -GGGG------GUGGAGGugU--UCCUGGAGUauc -5'
27485 5' -55.3 NC_005872.1 + 6796 1.11 0.000306
Target:  5'- cCCCCCACCUCCACAAGGACCUCAUAGa -3'
miRNA:   3'- -GGGGGUGGAGGUGUUCCUGGAGUAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.