miRNA: 3'- cGGUGC---AugCCUCC-GUGUCGGc------GUUG- -5'
miRNA: 3'- -CGGUGCa--UGCCUCCGUGU----------CGGcguug -5'
miRNA: 3'- -CGGUGCA--UGCC-------------UCcGUGUCGGCGUUg -5'
miRNA: 3'- -CGGUGCAUGCCUCCGUGUCGGCGUUG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27488 | 3' | -57 | NC_005872.1 | + | 1318 | 0.68 | 0.325405 |
|
Target: 5'- aCCACGcccUugGGAGGcCGCGGCCucccuccCGACa -3' miRNA: 3'- cGGUGC---AugCCUCC-GUGUCGGc------GUUG- -5' |
|||||||
| 27488 | 3' | -57 | NC_005872.1 | + | 27795 | 0.7 | 0.230907 |
|
Target: 5'- aGCCGCGgacACGGAGGCGCAcaauauauuuGCCa---- -3' miRNA: 3'- -CGGUGCa--UGCCUCCGUGU----------CGGcguug -5' |
|||||||
| 27488 | 3' | -57 | NC_005872.1 | + | 13324 | 0.71 | 0.195152 |
|
Target: 5'- aGCCGCGUauACGGccccaccugccacAGcCACAGCCGCGGa -3' miRNA: 3'- -CGGUGCA--UGCC-------------UCcGUGUCGGCGUUg -5' |
|||||||
| 27488 | 3' | -57 | NC_005872.1 | + | 13686 | 1.12 | 0.000153 |
|
Target: 5'- aGCCACGUACGGAGGCACAGCCGCAACg -3' miRNA: 3'- -CGGUGCAUGCCUCCGUGUCGGCGUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home