miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2749 5' -55.2 NC_001491.2 + 118324 0.66 0.934411
Target:  5'- cCCAGCCgGCgUCCCCGgcacCCAGCc -3'
miRNA:   3'- -GGUCGGaUGaAGGGGCgacuGGUUGu -5'
2749 5' -55.2 NC_001491.2 + 27872 0.66 0.931364
Target:  5'- aCCAcuGUCUACgguguccgcagucaUCCCaguaGUUGACCAGCAc -3'
miRNA:   3'- -GGU--CGGAUGa-------------AGGGg---CGACUGGUUGU- -5'
2749 5' -55.2 NC_001491.2 + 50815 0.66 0.929285
Target:  5'- aCGGCC-AUUUUcgcggCCCGUUGACCuACAa -3'
miRNA:   3'- gGUCGGaUGAAG-----GGGCGACUGGuUGU- -5'
2749 5' -55.2 NC_001491.2 + 91689 0.66 0.929285
Target:  5'- gCUAGCacgGCgUCCCugaCGCUGGCCAGgGa -3'
miRNA:   3'- -GGUCGga-UGaAGGG---GCGACUGGUUgU- -5'
2749 5' -55.2 NC_001491.2 + 29189 0.66 0.923917
Target:  5'- -gAGCCUGCUgacggaaaacUCCCCGCcu-CCAAa- -3'
miRNA:   3'- ggUCGGAUGA----------AGGGGCGacuGGUUgu -5'
2749 5' -55.2 NC_001491.2 + 14716 0.66 0.918878
Target:  5'- cUCAGCCUcgagggggcuguuuuCUUCCUCGaugaGACCAGCGc -3'
miRNA:   3'- -GGUCGGAu--------------GAAGGGGCga--CUGGUUGU- -5'
2749 5' -55.2 NC_001491.2 + 116239 0.67 0.906362
Target:  5'- -aGGCCgug-UCCCUGCUGGCCc--- -3'
miRNA:   3'- ggUCGGaugaAGGGGCGACUGGuugu -5'
2749 5' -55.2 NC_001491.2 + 122037 0.67 0.900032
Target:  5'- ----gCUGCUcUCCCCGCUGGCCu--- -3'
miRNA:   3'- ggucgGAUGA-AGGGGCGACUGGuugu -5'
2749 5' -55.2 NC_001491.2 + 116828 0.67 0.879645
Target:  5'- cCCGGCCcagg-CCgCCGCUGccgcggccaGCCAGCAa -3'
miRNA:   3'- -GGUCGGaugaaGG-GGCGAC---------UGGUUGU- -5'
2749 5' -55.2 NC_001491.2 + 138315 0.68 0.86493
Target:  5'- uCCGGCC-ACcaCCCC-CUcGACCGGCAc -3'
miRNA:   3'- -GGUCGGaUGaaGGGGcGA-CUGGUUGU- -5'
2749 5' -55.2 NC_001491.2 + 4090 0.68 0.849366
Target:  5'- gCAGauCUUGC-UCCCCGacCUGACCAACu -3'
miRNA:   3'- gGUC--GGAUGaAGGGGC--GACUGGUUGu -5'
2749 5' -55.2 NC_001491.2 + 115586 0.69 0.788999
Target:  5'- gCGGCCUACUgUCCCCccgaGCUGGuggcggagcucaUCGACAa -3'
miRNA:   3'- gGUCGGAUGA-AGGGG----CGACU------------GGUUGU- -5'
2749 5' -55.2 NC_001491.2 + 30818 0.7 0.76081
Target:  5'- -aAGCCUACUUUacggCGCUGGCCgGACAg -3'
miRNA:   3'- ggUCGGAUGAAGgg--GCGACUGG-UUGU- -5'
2749 5' -55.2 NC_001491.2 + 124949 0.72 0.629879
Target:  5'- aCGGgCUACUUCCCCGUcGcacCCAGCGa -3'
miRNA:   3'- gGUCgGAUGAAGGGGCGaCu--GGUUGU- -5'
2749 5' -55.2 NC_001491.2 + 51262 0.73 0.577524
Target:  5'- gCCGGCCUGg-UCCCCcugggcgGCUGccGCCAGCAc -3'
miRNA:   3'- -GGUCGGAUgaAGGGG-------CGAC--UGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.