miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27492 5' -54.6 NC_005872.1 + 20889 0.66 0.524368
Target:  5'- uAGCCGCaaUAGUGACaAACCAACCa-- -3'
miRNA:   3'- -UCGGUGcgGUCGUUG-UUGGUUGGagu -5'
27492 5' -54.6 NC_005872.1 + 18186 0.66 0.501933
Target:  5'- cAGCCACGuccacccaaacuCCAGCAccugagGCAuaauACCGACC-CAa -3'
miRNA:   3'- -UCGGUGC------------GGUCGU------UGU----UGGUUGGaGU- -5'
27492 5' -54.6 NC_005872.1 + 9887 0.67 0.46267
Target:  5'- cGCCACaaagacccuuaagguGuCCGGCAAC-ACCAaaGCCUCu -3'
miRNA:   3'- uCGGUG---------------C-GGUCGUUGuUGGU--UGGAGu -5'
27492 5' -54.6 NC_005872.1 + 11353 0.67 0.458406
Target:  5'- uGCCA-GCCAGCAAaccguCAACCAcgcuauGCCUa- -3'
miRNA:   3'- uCGGUgCGGUCGUU-----GUUGGU------UGGAgu -5'
27492 5' -54.6 NC_005872.1 + 14920 0.69 0.36854
Target:  5'- cGCCA-GCCAGCG-CGGCCAAUaUCGc -3'
miRNA:   3'- uCGGUgCGGUCGUuGUUGGUUGgAGU- -5'
27492 5' -54.6 NC_005872.1 + 21265 0.69 0.338753
Target:  5'- gAGCCACGCUuaagguGGCGAUAGCaCAacguaagauauaugGCCUUAg -3'
miRNA:   3'- -UCGGUGCGG------UCGUUGUUG-GU--------------UGGAGU- -5'
27492 5' -54.6 NC_005872.1 + 16550 0.69 0.324106
Target:  5'- aAGagGCGCCGGaaucACAGCCAcgACCUCAg -3'
miRNA:   3'- -UCggUGCGGUCgu--UGUUGGU--UGGAGU- -5'
27492 5' -54.6 NC_005872.1 + 12548 0.72 0.227681
Target:  5'- uAGCCGCGCCAcGCcACAgauagggaguGCCGGCCa-- -3'
miRNA:   3'- -UCGGUGCGGU-CGuUGU----------UGGUUGGagu -5'
27492 5' -54.6 NC_005872.1 + 11976 0.72 0.221369
Target:  5'- uAGUCACcaaGCCAGC-AUAGCCAGCCgCAu -3'
miRNA:   3'- -UCGGUG---CGGUCGuUGUUGGUUGGaGU- -5'
27492 5' -54.6 NC_005872.1 + 13888 0.72 0.215206
Target:  5'- uAGCCGCGCCAGCcaaguGCcuCCGACUa-- -3'
miRNA:   3'- -UCGGUGCGGUCGu----UGuuGGUUGGagu -5'
27492 5' -54.6 NC_005872.1 + 7871 0.73 0.19201
Target:  5'- uAGCCaauGCGUCGGCAAUAuCCGGCCUa- -3'
miRNA:   3'- -UCGG---UGCGGUCGUUGUuGGUUGGAgu -5'
27492 5' -54.6 NC_005872.1 + 21700 0.76 0.127322
Target:  5'- cGCCGC-UCAGCAACAACCuccuuACCUCc -3'
miRNA:   3'- uCGGUGcGGUCGUUGUUGGu----UGGAGu -5'
27492 5' -54.6 NC_005872.1 + 19854 1.09 0.000414
Target:  5'- gAGCCACGCCAGCAACAACCAACCUCAu -3'
miRNA:   3'- -UCGGUGCGGUCGUUGUUGGUUGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.