miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2750 5' -57.9 NC_001491.2 + 97368 0.66 0.823378
Target:  5'- gGCACAGC-CGCGGU-CUgCGcGGcGCu -3'
miRNA:   3'- gCGUGUCGaGCGCCAuGAgGCuCC-UG- -5'
2750 5' -57.9 NC_001491.2 + 95172 0.66 0.814886
Target:  5'- uGCGC-GUUUGCGGUugcguccaugGCUauaacCCGGGGGCa -3'
miRNA:   3'- gCGUGuCGAGCGCCA----------UGA-----GGCUCCUG- -5'
2750 5' -57.9 NC_001491.2 + 56012 0.67 0.797424
Target:  5'- gGUACAGCgcgGUGGU-CUCCGGaGACa -3'
miRNA:   3'- gCGUGUCGag-CGCCAuGAGGCUcCUG- -5'
2750 5' -57.9 NC_001491.2 + 4360 0.67 0.788471
Target:  5'- uGCAgAGC-CGCGGgauauagGCUCCcacggGAGGAa -3'
miRNA:   3'- gCGUgUCGaGCGCCa------UGAGG-----CUCCUg -5'
2750 5' -57.9 NC_001491.2 + 130516 0.67 0.788471
Target:  5'- aGCAaAGCUUGgGGUACg-CGGGGAa -3'
miRNA:   3'- gCGUgUCGAGCgCCAUGagGCUCCUg -5'
2750 5' -57.9 NC_001491.2 + 134962 0.67 0.779381
Target:  5'- aCGCGCAaGCguggUUGCGGUugUuuGGGcGGCu -3'
miRNA:   3'- -GCGUGU-CG----AGCGCCAugAggCUC-CUG- -5'
2750 5' -57.9 NC_001491.2 + 138286 0.67 0.770162
Target:  5'- gGCACGGCaccUCGCugGGUGCgaCGGGGAa -3'
miRNA:   3'- gCGUGUCG---AGCG--CCAUGagGCUCCUg -5'
2750 5' -57.9 NC_001491.2 + 148483 0.67 0.760823
Target:  5'- aGgACGcGCUgGCGGUACUCCcucggagccaGGGGAa -3'
miRNA:   3'- gCgUGU-CGAgCGCCAUGAGG----------CUCCUg -5'
2750 5' -57.9 NC_001491.2 + 119159 0.68 0.741821
Target:  5'- gGCACuccuucuucGGCUUGCGGagguaagaGCUccCCGGGGACa -3'
miRNA:   3'- gCGUG---------UCGAGCGCCa-------UGA--GGCUCCUG- -5'
2750 5' -57.9 NC_001491.2 + 25011 0.68 0.738938
Target:  5'- gGCAuCAGCggUCGCcgucuguuuacgcuGGUACUCgaUGAGGACa -3'
miRNA:   3'- gCGU-GUCG--AGCG--------------CCAUGAG--GCUCCUG- -5'
2750 5' -57.9 NC_001491.2 + 146810 0.68 0.738938
Target:  5'- gGCGCAGCUCgucggagcccagGCGGUGgguagggucagaguCcCCGAGGAg -3'
miRNA:   3'- gCGUGUCGAG------------CGCCAU--------------GaGGCUCCUg -5'
2750 5' -57.9 NC_001491.2 + 121418 0.68 0.732176
Target:  5'- cCGCACGGCUgucCGUGGggcaugGCUgggCCGGGGuCg -3'
miRNA:   3'- -GCGUGUCGA---GCGCCa-----UGA---GGCUCCuG- -5'
2750 5' -57.9 NC_001491.2 + 140187 0.68 0.722446
Target:  5'- -cCGCGGCgcaCGCGGUcucgcugccgcGCUCCGuggGGGACu -3'
miRNA:   3'- gcGUGUCGa--GCGCCA-----------UGAGGC---UCCUG- -5'
2750 5' -57.9 NC_001491.2 + 18987 0.69 0.692839
Target:  5'- cCGCACgAGUUCGUccggaGGgcgagACUCgCGAGGGCc -3'
miRNA:   3'- -GCGUG-UCGAGCG-----CCa----UGAG-GCUCCUG- -5'
2750 5' -57.9 NC_001491.2 + 137708 0.69 0.682859
Target:  5'- gGgGCGGCgUCGCGGcgGCggCCGuGGACc -3'
miRNA:   3'- gCgUGUCG-AGCGCCa-UGa-GGCuCCUG- -5'
2750 5' -57.9 NC_001491.2 + 115058 0.7 0.609296
Target:  5'- gGCGCaAGCUCcUGGUGCUggacgcggucuccaCCGAGGAUu -3'
miRNA:   3'- gCGUG-UCGAGcGCCAUGA--------------GGCUCCUG- -5'
2750 5' -57.9 NC_001491.2 + 146465 0.71 0.559231
Target:  5'- cCGCGCAGacccggguguacgcUUCGCGG-ACgcggaCCGAGGGCg -3'
miRNA:   3'- -GCGUGUC--------------GAGCGCCaUGa----GGCUCCUG- -5'
2750 5' -57.9 NC_001491.2 + 148293 0.71 0.54245
Target:  5'- cCGCGCGGCUgagGUGGcGCUCCcGGGGCc -3'
miRNA:   3'- -GCGUGUCGAg--CGCCaUGAGGcUCCUG- -5'
2750 5' -57.9 NC_001491.2 + 98134 0.72 0.494173
Target:  5'- gCGCACAGCcucCGUGGUGCUCgaacuagccuUGAGGGu -3'
miRNA:   3'- -GCGUGUCGa--GCGCCAUGAG----------GCUCCUg -5'
2750 5' -57.9 NC_001491.2 + 141324 0.73 0.457009
Target:  5'- gCGCGCcacGCU-GCGGgcacugaACUCCGAGGACc -3'
miRNA:   3'- -GCGUGu--CGAgCGCCa------UGAGGCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.