miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27503 5' -53.8 NC_005879.1 + 33816 0.66 0.70957
Target:  5'- uGCgGUGCGUACgAUGgGCG-GCGAGCAu -3'
miRNA:   3'- gCG-UACGCGUG-UGUgUGCaUGCUCGU- -5'
27503 5' -53.8 NC_005879.1 + 15174 0.66 0.698375
Target:  5'- aGCAUGCGCAU---UugGUcuuuaACGGGCGc -3'
miRNA:   3'- gCGUACGCGUGuguGugCA-----UGCUCGU- -5'
27503 5' -53.8 NC_005879.1 + 23169 0.67 0.641605
Target:  5'- cCGUaAUGCcaauaugaGCACACAUGUgGCGAGCAa -3'
miRNA:   3'- -GCG-UACGcg------UGUGUGUGCA-UGCUCGU- -5'
27503 5' -53.8 NC_005879.1 + 37631 0.68 0.573271
Target:  5'- aGCAUGCcCACGauacCACACc-GCGAGCAu -3'
miRNA:   3'- gCGUACGcGUGU----GUGUGcaUGCUCGU- -5'
27503 5' -53.8 NC_005879.1 + 314 0.74 0.277511
Target:  5'- uGUGUGCGCAUGCguuccuugguuACGCGUACGuGCGc -3'
miRNA:   3'- gCGUACGCGUGUG-----------UGUGCAUGCuCGU- -5'
27503 5' -53.8 NC_005879.1 + 367 1.01 0.003477
Target:  5'- aCGCAUGCGCACACACACGUACGAGg- -3'
miRNA:   3'- -GCGUACGCGUGUGUGUGCAUGCUCgu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.