miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27508 5' -49.4 NC_005879.1 + 7223 0.65 0.932033
Target:  5'- --aAGCGCgGCcugcaaucggaccGCCGAUGAuGAUUGCg -3'
miRNA:   3'- ugcUUGCGgCG-------------CGGUUGCUuUUAACG- -5'
27508 5' -49.4 NC_005879.1 + 35136 0.66 0.920418
Target:  5'- gGCGAGCGCacaCGCaaGUCAACuGAAGcUGCg -3'
miRNA:   3'- -UGCUUGCG---GCG--CGGUUGcUUUUaACG- -5'
27508 5' -49.4 NC_005879.1 + 26523 0.66 0.920418
Target:  5'- uUGAcacGCGCgGCGgCGAUGAAGAUucaUGUa -3'
miRNA:   3'- uGCU---UGCGgCGCgGUUGCUUUUA---ACG- -5'
27508 5' -49.4 NC_005879.1 + 14030 0.67 0.86807
Target:  5'- --uGACGCCGaCGgCAACGAagucgAAGUUGUu -3'
miRNA:   3'- ugcUUGCGGC-GCgGUUGCU-----UUUAACG- -5'
27508 5' -49.4 NC_005879.1 + 18877 0.68 0.850517
Target:  5'- cAUGAugGCCGCaGCCGACa-------- -3'
miRNA:   3'- -UGCUugCGGCG-CGGUUGcuuuuaacg -5'
27508 5' -49.4 NC_005879.1 + 31786 0.68 0.835724
Target:  5'- cCGAuACGCCGCGCugucuccgCAGCGAAucgccuuuuuugUGCg -3'
miRNA:   3'- uGCU-UGCGGCGCG--------GUUGCUUuua---------ACG- -5'
27508 5' -49.4 NC_005879.1 + 8731 0.69 0.812388
Target:  5'- -aGAGCGCCGaCuaCAGCGAAAcguccaUGCa -3'
miRNA:   3'- ugCUUGCGGC-GcgGUUGCUUUua----ACG- -5'
27508 5' -49.4 NC_005879.1 + 3716 0.69 0.770842
Target:  5'- uGCGAgccuGCGCUuuuuCGCCAACGAAug--GCg -3'
miRNA:   3'- -UGCU----UGCGGc---GCGGUUGCUUuuaaCG- -5'
27508 5' -49.4 NC_005879.1 + 39491 0.7 0.749045
Target:  5'- gGCGAAgGCCGaUGCCAAgGggGc--GCa -3'
miRNA:   3'- -UGCUUgCGGC-GCGGUUgCuuUuaaCG- -5'
27508 5' -49.4 NC_005879.1 + 39288 0.71 0.65758
Target:  5'- gACaGACGCC-CGuCCGACGggGGUUcGCg -3'
miRNA:   3'- -UGcUUGCGGcGC-GGUUGCuuUUAA-CG- -5'
27508 5' -49.4 NC_005879.1 + 21306 0.72 0.645888
Target:  5'- cCGAGcCGCCGCuauucaGCCAACGAGGca-GCg -3'
miRNA:   3'- uGCUU-GCGGCG------CGGUUGCUUUuaaCG- -5'
27508 5' -49.4 NC_005879.1 + 27473 0.74 0.51881
Target:  5'- uGCGGugGCCGauagcuuaggcaUGCCAugGGAGuggUGCg -3'
miRNA:   3'- -UGCUugCGGC------------GCGGUugCUUUua-ACG- -5'
27508 5' -49.4 NC_005879.1 + 13850 0.76 0.415615
Target:  5'- gACG-ACGCCaaacccuGCGCCGACGGAguggcagguguuugcAGUUGCg -3'
miRNA:   3'- -UGCuUGCGG-------CGCGGUUGCUU---------------UUAACG- -5'
27508 5' -49.4 NC_005879.1 + 8763 1.11 0.001962
Target:  5'- uACGAACGCCGCGCCAACGAAAAUUGCc -3'
miRNA:   3'- -UGCUUGCGGCGCGGUUGCUUUUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.