miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27516 5' -52.6 NC_005879.1 + 21930 0.66 0.796723
Target:  5'- --cUGACGUauACACUCGCGcuGCGCGCg -3'
miRNA:   3'- acaGCUGCAgcUGUGGGUGU--UGUGUG- -5'
27516 5' -52.6 NC_005879.1 + 1148 0.66 0.765781
Target:  5'- gUGUCGACGUCGACACagguuuCGAUu--- -3'
miRNA:   3'- -ACAGCUGCAGCUGUGggu---GUUGugug -5'
27516 5' -52.6 NC_005879.1 + 38042 0.7 0.552777
Target:  5'- gUGUCGACgGUCGACACaCCcCGA-ACAUg -3'
miRNA:   3'- -ACAGCUG-CAGCUGUG-GGuGUUgUGUG- -5'
27516 5' -52.6 NC_005879.1 + 9012 0.72 0.445633
Target:  5'- gUGUCGAUGUCGACAuacuUCCGCu-UugGCg -3'
miRNA:   3'- -ACAGCUGCAGCUGU----GGGUGuuGugUG- -5'
27516 5' -52.6 NC_005879.1 + 7048 0.72 0.42559
Target:  5'- gUGUCGAUGUCGACACaCCcUAAU-CACc -3'
miRNA:   3'- -ACAGCUGCAGCUGUG-GGuGUUGuGUG- -5'
27516 5' -52.6 NC_005879.1 + 36222 0.73 0.368833
Target:  5'- gUGUCGACGUCGACACCgC-CuuUGCGa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGG-GuGuuGUGUg -5'
27516 5' -52.6 NC_005879.1 + 33285 0.74 0.342466
Target:  5'- gUGUCGACGUCGACACaCUgguaGCGAaAUACc -3'
miRNA:   3'- -ACAGCUGCAGCUGUG-GG----UGUUgUGUG- -5'
27516 5' -52.6 NC_005879.1 + 24632 0.76 0.271708
Target:  5'- gUGUCGACGUCGACACCCu-------- -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuguugugug -5'
27516 5' -52.6 NC_005879.1 + 29333 0.76 0.271708
Target:  5'- gUGUCGACGUCGACACCCu-------- -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuguugugug -5'
27516 5' -52.6 NC_005879.1 + 36276 0.76 0.237739
Target:  5'- gUGUCGACGUCGACACaCUGCcgaGCAUc -3'
miRNA:   3'- -ACAGCUGCAGCUGUG-GGUGuugUGUG- -5'
27516 5' -52.6 NC_005879.1 + 1094 0.77 0.207397
Target:  5'- gUGUCGACGUCGACACUauuccCGAUGCAg -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGgu---GUUGUGUg -5'
27516 5' -52.6 NC_005879.1 + 34815 0.79 0.170583
Target:  5'- gUGUCGACGUCGACACCCuACuuaaggagcCAgACa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGG-UGuu-------GUgUG- -5'
27516 5' -52.6 NC_005879.1 + 29387 0.8 0.147975
Target:  5'- gUGUCGACGUCGACACCCuCuuuuuACugGa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuGu----UGugUg -5'
27516 5' -52.6 NC_005879.1 + 34761 0.8 0.131891
Target:  5'- gUGUCGACGUCGACACCCAUc------ -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGUGuugugug -5'
27516 5' -52.6 NC_005879.1 + 16894 0.81 0.120902
Target:  5'- gUGUCGACGUCGACACCCucccccuCAgGCu -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuguu---GUgUG- -5'
27516 5' -52.6 NC_005879.1 + 21856 0.82 0.104462
Target:  5'- gUGUCGACGUCGACACCCuaucuCAccGCucuCACu -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGu----GU--UGu--GUG- -5'
27516 5' -52.6 NC_005879.1 + 16840 0.82 0.101437
Target:  5'- gUGUCGACGUCGACACCCcCGA-ACAg -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuGUUgUGUg -5'
27516 5' -52.6 NC_005879.1 + 21802 0.84 0.0777
Target:  5'- gUGUCGACGUCGACACCCGCccauuAUuuGCa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGUGu----UGugUG- -5'
27516 5' -52.6 NC_005879.1 + 33231 0.9 0.030796
Target:  5'- gUGUCGACGUCGACACCCaucauuucagcagcuACAGCAUAUa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGG---------------UGUUGUGUG- -5'
27516 5' -52.6 NC_005879.1 + 24686 1.11 0.000984
Target:  5'- gUGUCGACGUCGACACCCACAACACACa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGUGUUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.