miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2752 3' -63.5 NC_001491.2 + 34973 0.66 0.600005
Target:  5'- cGGCGcuaUGg-GUUCCGGGcCCAGuGGUGCGc -3'
miRNA:   3'- -CUGC---ACagCAGGGCCC-GGUC-CCGCGC- -5'
2752 3' -63.5 NC_001491.2 + 107463 0.66 0.577887
Target:  5'- aGGCuGUGUaccaCGUCCCaaGGGCUcgucuucaugcuguGGGGCGCc -3'
miRNA:   3'- -CUG-CACA----GCAGGG--CCCGG--------------UCCCGCGc -5'
2752 3' -63.5 NC_001491.2 + 111246 0.66 0.561652
Target:  5'- cACGUGcaCGaCCgGGGCCacccaccagAGGGCGCa -3'
miRNA:   3'- cUGCACa-GCaGGgCCCGG---------UCCCGCGc -5'
2752 3' -63.5 NC_001491.2 + 137724 0.66 0.561652
Target:  5'- cGCGgGUC--CCCGGGgCGGGGCgGCGu -3'
miRNA:   3'- cUGCaCAGcaGGGCCCgGUCCCG-CGC- -5'
2752 3' -63.5 NC_001491.2 + 20340 0.67 0.55216
Target:  5'- cGCGgcaaacaucugGUUGggUgGGGCCGGGGCGCGu -3'
miRNA:   3'- cUGCa----------CAGCagGgCCCGGUCCCGCGC- -5'
2752 3' -63.5 NC_001491.2 + 148943 0.68 0.4964
Target:  5'- cACGc--CGgggCUCGGGCCGGGGUGCu -3'
miRNA:   3'- cUGCacaGCa--GGGCCCGGUCCCGCGc -5'
2752 3' -63.5 NC_001491.2 + 72154 0.68 0.484645
Target:  5'- cGCGUGagGUCCCGGGggcuCCaaucgaagucuggaGGGGCGuCGg -3'
miRNA:   3'- cUGCACagCAGGGCCC----GG--------------UCCCGC-GC- -5'
2752 3' -63.5 NC_001491.2 + 148284 0.68 0.45195
Target:  5'- uGAgGUGgCGcUCCCgGGGCCAGcgcacGGCGCa -3'
miRNA:   3'- -CUgCACaGC-AGGG-CCCGGUC-----CCGCGc -5'
2752 3' -63.5 NC_001491.2 + 116699 0.69 0.426347
Target:  5'- cGCG-GcCGcUCCgGGGaCCAGGGCGCc -3'
miRNA:   3'- cUGCaCaGC-AGGgCCC-GGUCCCGCGc -5'
2752 3' -63.5 NC_001491.2 + 145852 0.71 0.340343
Target:  5'- gGugGUGgaucCGaCCCGGGCCAGGG-GUc -3'
miRNA:   3'- -CugCACa---GCaGGGCCCGGUCCCgCGc -5'
2752 3' -63.5 NC_001491.2 + 147758 0.8 0.078145
Target:  5'- cGCGcGcCGUCCCGGGCCGGGGgGCc -3'
miRNA:   3'- cUGCaCaGCAGGGCCCGGUCCCgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.