miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2752 5' -55.3 NC_001491.2 + 116449 0.66 0.934411
Target:  5'- gAGCGgGCCAG--GCuCCUcGGGGACUc -3'
miRNA:   3'- -UCGUgCGGUCauUGuGGAcCCUCUGG- -5'
2752 5' -55.3 NC_001491.2 + 147973 0.66 0.933909
Target:  5'- gGGC-CGCCAGcAGCGCCgagaguccccccuUGaGGucGGACCa -3'
miRNA:   3'- -UCGuGCGGUCaUUGUGG-------------AC-CC--UCUGG- -5'
2752 5' -55.3 NC_001491.2 + 49782 0.66 0.923917
Target:  5'- cAGCAUGUCauAGUcGCGCCgGGGcgucuccgcucAGACCc -3'
miRNA:   3'- -UCGUGCGG--UCAuUGUGGaCCC-----------UCUGG- -5'
2752 5' -55.3 NC_001491.2 + 121371 0.66 0.923917
Target:  5'- gGGCugGgCCGGgguCGCCggagcUGGGcuGGGCCg -3'
miRNA:   3'- -UCGugC-GGUCauuGUGG-----ACCC--UCUGG- -5'
2752 5' -55.3 NC_001491.2 + 42556 0.66 0.918306
Target:  5'- cAGCACuGCCGcGUAuaucucggccGCAgCCUGGGcGGGCUc -3'
miRNA:   3'- -UCGUG-CGGU-CAU----------UGU-GGACCC-UCUGG- -5'
2752 5' -55.3 NC_001491.2 + 147023 0.66 0.914824
Target:  5'- cGC-CGCCGGgcgaggacgaugagGGCugCUGGGAccgagucgguggGGCCa -3'
miRNA:   3'- uCGuGCGGUCa-------------UUGugGACCCU------------CUGG- -5'
2752 5' -55.3 NC_001491.2 + 101683 0.66 0.906362
Target:  5'- gAGCugGCCAGguGCACCgccaGcGuGGCCa -3'
miRNA:   3'- -UCGugCGGUCauUGUGGa---CcCuCUGG- -5'
2752 5' -55.3 NC_001491.2 + 13931 0.67 0.900032
Target:  5'- uAGCGCGCCGGggcUGGCGgCCUuGGGcgguGGCa -3'
miRNA:   3'- -UCGUGCGGUC---AUUGU-GGA-CCCu---CUGg -5'
2752 5' -55.3 NC_001491.2 + 32266 0.67 0.893467
Target:  5'- aAGCuCGCCAGccuCACCgcuguugcUGGGGGugUg -3'
miRNA:   3'- -UCGuGCGGUCauuGUGG--------ACCCUCugG- -5'
2752 5' -55.3 NC_001491.2 + 116905 0.67 0.890776
Target:  5'- cGGCGCGCCuacgcgGACAuggccuacCCgagagacgaggcgGGGAGGCCg -3'
miRNA:   3'- -UCGUGCGGuca---UUGU--------GGa------------CCCUCUGG- -5'
2752 5' -55.3 NC_001491.2 + 102821 0.67 0.88667
Target:  5'- cGGcCACGCgGGUGGCGCCUGuaauGACg -3'
miRNA:   3'- -UC-GUGCGgUCAUUGUGGACccu-CUGg -5'
2752 5' -55.3 NC_001491.2 + 146300 0.67 0.879645
Target:  5'- aGGCGCGCCGGaGGC-UCUGGaGGAUg -3'
miRNA:   3'- -UCGUGCGGUCaUUGuGGACCcUCUGg -5'
2752 5' -55.3 NC_001491.2 + 110780 0.67 0.872397
Target:  5'- cGCGgGCCccAGU--CGCCUGGGugcuGGCCc -3'
miRNA:   3'- uCGUgCGG--UCAuuGUGGACCCu---CUGG- -5'
2752 5' -55.3 NC_001491.2 + 33613 0.67 0.872397
Target:  5'- cGGCAgGCUAGaAACuguaGCCUGGGGaauaguucugcGGCCu -3'
miRNA:   3'- -UCGUgCGGUCaUUG----UGGACCCU-----------CUGG- -5'
2752 5' -55.3 NC_001491.2 + 116349 0.67 0.864172
Target:  5'- uGGCGcCGCUGGUGcgcuacaACGCCgaGGGGGcCCg -3'
miRNA:   3'- -UCGU-GCGGUCAU-------UGUGGa-CCCUCuGG- -5'
2752 5' -55.3 NC_001491.2 + 85196 0.68 0.841281
Target:  5'- uGCGaGCCccGUagGAUACCUGGG-GACCg -3'
miRNA:   3'- uCGUgCGGu-CA--UUGUGGACCCuCUGG- -5'
2752 5' -55.3 NC_001491.2 + 5648 0.68 0.841281
Target:  5'- cGGCGCGCCAGU--CAgC-GGGuagcuGGCCa -3'
miRNA:   3'- -UCGUGCGGUCAuuGUgGaCCCu----CUGG- -5'
2752 5' -55.3 NC_001491.2 + 145106 0.68 0.833003
Target:  5'- cGGggUGCCGGggacccucCGCCcgGGGAGGCCg -3'
miRNA:   3'- -UCguGCGGUCauu-----GUGGa-CCCUCUGG- -5'
2752 5' -55.3 NC_001491.2 + 115241 0.68 0.824541
Target:  5'- cGGCGCuGCUGGcGGC-CCUGGGGaACCg -3'
miRNA:   3'- -UCGUG-CGGUCaUUGuGGACCCUcUGG- -5'
2752 5' -55.3 NC_001491.2 + 88497 0.69 0.8159
Target:  5'- uGGCGCGCuuCAGU--CGCCUGGuGGACa -3'
miRNA:   3'- -UCGUGCG--GUCAuuGUGGACCcUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.