miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27520 3' -52.9 NC_005879.1 + 22603 0.66 0.786245
Target:  5'- cGGGgGUuccUGACGUgGACGCCUU-CUUGg -3'
miRNA:   3'- -CCCaCA---GCUGCAgCUGUGGGAuGAAU- -5'
27520 3' -52.9 NC_005879.1 + 29657 0.66 0.775966
Target:  5'- uGGGUGUUGAgGcguuUCGACACUUUgauuugcgACUUAg -3'
miRNA:   3'- -CCCACAGCUgC----AGCUGUGGGA--------UGAAU- -5'
27520 3' -52.9 NC_005879.1 + 9013 0.68 0.677819
Target:  5'- -uGUGUCGAUGUCGACAUaCUuccGCUUu -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGgGA---UGAAu -5'
27520 3' -52.9 NC_005879.1 + 34214 0.68 0.643822
Target:  5'- uGGGUGUUGuAUGUCGAaaCACCCcaaggGCa-- -3'
miRNA:   3'- -CCCACAGC-UGCAGCU--GUGGGa----UGaau -5'
27520 3' -52.9 NC_005879.1 + 14591 0.69 0.598382
Target:  5'- uGGUGUUGAgGUCGACcguaccauugacGCCCUAg--- -3'
miRNA:   3'- cCCACAGCUgCAGCUG------------UGGGAUgaau -5'
27520 3' -52.9 NC_005879.1 + 1149 0.69 0.575805
Target:  5'- -aGUGUCGACGUCGACACa------- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGggaugaau -5'
27520 3' -52.9 NC_005879.1 + 38044 0.72 0.426676
Target:  5'- uGGUGUCGACgGUCGACACaCCc----- -3'
miRNA:   3'- cCCACAGCUG-CAGCUGUG-GGaugaau -5'
27520 3' -52.9 NC_005879.1 + 1093 0.73 0.379131
Target:  5'- -uGUGUCGACGUCGACACUauucccgaUGCa-- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGGg-------AUGaau -5'
27520 3' -52.9 NC_005879.1 + 37983 0.74 0.318795
Target:  5'- gGGuGUGUCGAcCGUCGACACCaUugUUc -3'
miRNA:   3'- -CC-CACAGCU-GCAGCUGUGGgAugAAu -5'
27520 3' -52.9 NC_005879.1 + 36221 0.76 0.232729
Target:  5'- -uGUGUCGACGUCGACACCgccuUUGCg-- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGG----GAUGaau -5'
27520 3' -52.9 NC_005879.1 + 6990 0.76 0.232729
Target:  5'- gGGuGUGUCGACaUCGACACaCCUAUUUu -3'
miRNA:   3'- -CC-CACAGCUGcAGCUGUG-GGAUGAAu -5'
27520 3' -52.9 NC_005879.1 + 7052 0.78 0.186877
Target:  5'- aGGuGUGUCGAUGUCGACacACCCUAa--- -3'
miRNA:   3'- -CC-CACAGCUGCAGCUG--UGGGAUgaau -5'
27520 3' -52.9 NC_005879.1 + 33230 0.82 0.105491
Target:  5'- -uGUGUCGACGUCGACACCCa----- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGGGaugaau -5'
27520 3' -52.9 NC_005879.1 + 36278 0.84 0.071875
Target:  5'- cGGUGUCGACGUCGACACaCUGCc-- -3'
miRNA:   3'- cCCACAGCUGCAGCUGUGgGAUGaau -5'
27520 3' -52.9 NC_005879.1 + 33288 0.84 0.069765
Target:  5'- uGGGUGUCGACGUCGACACaCUGgUa- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGgGAUgAau -5'
27520 3' -52.9 NC_005879.1 + 16837 0.92 0.019548
Target:  5'- aGGGUGUCGACGUCGACACCCccgaacaggucgUGCUa- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGGG------------AUGAau -5'
27520 3' -52.9 NC_005879.1 + 34758 0.93 0.017294
Target:  5'- aGGGUGUCGACGUCGACACCCa----- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGGGaugaau -5'
27520 3' -52.9 NC_005879.1 + 21799 0.93 0.017294
Target:  5'- aGGGUGUCGACGUCGACACCCg----- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGGGaugaau -5'
27520 3' -52.9 NC_005879.1 + 24689 0.94 0.014836
Target:  5'- aGGGUGUCGACGUCGACACCC-ACa-- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGGGaUGaau -5'
27520 3' -52.9 NC_005879.1 + 16897 0.95 0.012725
Target:  5'- gGGGUGUCGACGUCGACACCCUcccccucagGCUUc -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGGGA---------UGAAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.