Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27520 | 3' | -52.9 | NC_005879.1 | + | 1149 | 0.69 | 0.575805 |
Target: 5'- -aGUGUCGACGUCGACACa------- -3' miRNA: 3'- ccCACAGCUGCAGCUGUGggaugaau -5' |
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27520 | 3' | -52.9 | NC_005879.1 | + | 34214 | 0.68 | 0.643822 |
Target: 5'- uGGGUGUUGuAUGUCGAaaCACCCcaaggGCa-- -3' miRNA: 3'- -CCCACAGC-UGCAGCU--GUGGGa----UGaau -5' |
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27520 | 3' | -52.9 | NC_005879.1 | + | 9013 | 0.68 | 0.677819 |
Target: 5'- -uGUGUCGAUGUCGACAUaCUuccGCUUu -3' miRNA: 3'- ccCACAGCUGCAGCUGUGgGA---UGAAu -5' |
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27520 | 3' | -52.9 | NC_005879.1 | + | 22603 | 0.66 | 0.786245 |
Target: 5'- cGGGgGUuccUGACGUgGACGCCUU-CUUGg -3' miRNA: 3'- -CCCaCA---GCUGCAgCUGUGGGAuGAAU- -5' |
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27520 | 3' | -52.9 | NC_005879.1 | + | 34818 | 1.09 | 0.001221 |
Target: 5'- uGGGUGUCGACGUCGACACCCUACUUAa -3' miRNA: 3'- -CCCACAGCUGCAGCUGUGGGAUGAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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