miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27520 5' -50.7 NC_005879.1 + 11309 0.66 0.850517
Target:  5'- aGGCGgcGGCGgcGGCGguaauagCGCCGUUUGGu -3'
miRNA:   3'- -CCGU--UCGUuuCUGUaa-----GCGGCGGAUC- -5'
27520 5' -50.7 NC_005879.1 + 1410 0.67 0.822271
Target:  5'- gGGCAGGUAAGGAUAUUggggCGuuGCaCUu- -3'
miRNA:   3'- -CCGUUCGUUUCUGUAA----GCggCG-GAuc -5'
27520 5' -50.7 NC_005879.1 + 27575 0.67 0.812388
Target:  5'- cGCAAucGCAGGGuuGUaCGCCGCCa-- -3'
miRNA:   3'- cCGUU--CGUUUCugUAaGCGGCGGauc -5'
27520 5' -50.7 NC_005879.1 + 12657 0.68 0.737938
Target:  5'- aGGCGgaaaGGUGAuuGACA-UCGCCGCCg-- -3'
miRNA:   3'- -CCGU----UCGUUu-CUGUaAGCGGCGGauc -5'
27520 5' -50.7 NC_005879.1 + 34988 0.68 0.72671
Target:  5'- cGGCAGGUGAgcgcuugauuGGAgAUUCGCUGCUc-- -3'
miRNA:   3'- -CCGUUCGUU----------UCUgUAAGCGGCGGauc -5'
27520 5' -50.7 NC_005879.1 + 30600 0.69 0.669244
Target:  5'- ----cGuCAAAGGCGUUgGCCGUCUGGg -3'
miRNA:   3'- ccguuC-GUUUCUGUAAgCGGCGGAUC- -5'
27520 5' -50.7 NC_005879.1 + 17357 0.69 0.666914
Target:  5'- aGGCGAGCGGAGACuaaCGaagucacaacaaCGCCUGu -3'
miRNA:   3'- -CCGUUCGUUUCUGuaaGCg-----------GCGGAUc -5'
27520 5' -50.7 NC_005879.1 + 12141 0.7 0.65758
Target:  5'- aGGUAAGUugGAAGAUA-UCGC-GCCUAGc -3'
miRNA:   3'- -CCGUUCG--UUUCUGUaAGCGgCGGAUC- -5'
27520 5' -50.7 NC_005879.1 + 27393 0.71 0.541397
Target:  5'- aGGCGGGUccAGAGGCAaaagccgucaUUGCCGCCUAc -3'
miRNA:   3'- -CCGUUCG--UUUCUGUa---------AGCGGCGGAUc -5'
27520 5' -50.7 NC_005879.1 + 33834 0.74 0.383462
Target:  5'- cGGCGAGCAuuGACuccUCGCUGCagUAGg -3'
miRNA:   3'- -CCGUUCGUuuCUGua-AGCGGCGg-AUC- -5'
27520 5' -50.7 NC_005879.1 + 34778 1.11 0.001383
Target:  5'- uGGCAAGCAAAGACAUUCGCCGCCUAGc -3'
miRNA:   3'- -CCGUUCGUUUCUGUAAGCGGCGGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.