miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27526 5' -48.6 NC_005879.1 + 39506 0.66 0.933037
Target:  5'- uGGGCGcGAAGUGGgGgcGAAGGCCgAuGCc -3'
miRNA:   3'- -CCUGU-UUUCACCgU--CUUCUGGgUuCG- -5'
27526 5' -48.6 NC_005879.1 + 28148 0.66 0.927059
Target:  5'- uGGAUGGc-GUGGUgaGGGAGAaCCAAGCc -3'
miRNA:   3'- -CCUGUUuuCACCG--UCUUCUgGGUUCG- -5'
27526 5' -48.6 NC_005879.1 + 33074 0.67 0.914148
Target:  5'- -cGCGAAA---GCGGAAGACCCA-GCu -3'
miRNA:   3'- ccUGUUUUcacCGUCUUCUGGGUuCG- -5'
27526 5' -48.6 NC_005879.1 + 16524 0.68 0.884556
Target:  5'- gGGGCGAuAGGUGGaaucaAGAgcaaaaAGGCCgAGGCc -3'
miRNA:   3'- -CCUGUU-UUCACCg----UCU------UCUGGgUUCG- -5'
27526 5' -48.6 NC_005879.1 + 38930 0.68 0.86795
Target:  5'- uGGACGccAGAGUGGUGGugagcaaacaGGGACaCgAAGCa -3'
miRNA:   3'- -CCUGU--UUUCACCGUC----------UUCUG-GgUUCG- -5'
27526 5' -48.6 NC_005879.1 + 15195 0.68 0.850213
Target:  5'- uGGGCAAcGGcGGCGGuguuuuGGCCguGGCg -3'
miRNA:   3'- -CCUGUUuUCaCCGUCuu----CUGGguUCG- -5'
27526 5' -48.6 NC_005879.1 + 27808 0.69 0.831422
Target:  5'- gGGACGGGGacaGGCAGAuugucuuacacuGGACCCGcacugcAGCa -3'
miRNA:   3'- -CCUGUUUUca-CCGUCU------------UCUGGGU------UCG- -5'
27526 5' -48.6 NC_005879.1 + 24111 0.69 0.801453
Target:  5'- -aACGAAuucUGGCGGAAGgcGCCCAAGg -3'
miRNA:   3'- ccUGUUUuc-ACCGUCUUC--UGGGUUCg -5'
27526 5' -48.6 NC_005879.1 + 30136 0.7 0.758698
Target:  5'- uGGAgCAAGGccGUGGUucAGAAGACgUAAGCu -3'
miRNA:   3'- -CCU-GUUUU--CACCG--UCUUCUGgGUUCG- -5'
27526 5' -48.6 NC_005879.1 + 6873 0.72 0.690373
Target:  5'- -uACAAGAGUGGUAGccAAGugCCAuaucggucauAGCg -3'
miRNA:   3'- ccUGUUUUCACCGUC--UUCugGGU----------UCG- -5'
27526 5' -48.6 NC_005879.1 + 6843 1.16 0.001062
Target:  5'- uGGACAAAAGUGGCAGAAGACCCAAGCg -3'
miRNA:   3'- -CCUGUUUUCACCGUCUUCUGGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.