miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27532 5' -54.3 NC_005879.1 + 21309 0.66 0.641043
Target:  5'- -uGUCCGagcCGCCGCUauUCAGCCAAc -3'
miRNA:   3'- guUAGGUgguGCGGCGG--AGUUGGUUu -5'
27532 5' -54.3 NC_005879.1 + 11300 0.66 0.641043
Target:  5'- ---aCCGCCGCcguuGCCGCUUCuccAGCCAc- -3'
miRNA:   3'- guuaGGUGGUG----CGGCGGAG---UUGGUuu -5'
27532 5' -54.3 NC_005879.1 + 26353 0.66 0.637585
Target:  5'- aAAUCCACuuagguaucucaggCACGUCGCCuagugugggcaUCGACCAu- -3'
miRNA:   3'- gUUAGGUG--------------GUGCGGCGG-----------AGUUGGUuu -5'
27532 5' -54.3 NC_005879.1 + 10949 0.66 0.606476
Target:  5'- ---aCCACCGcCGCCGCCgCcGCCu-- -3'
miRNA:   3'- guuaGGUGGU-GCGGCGGaGuUGGuuu -5'
27532 5' -54.3 NC_005879.1 + 11363 0.67 0.560769
Target:  5'- ---gCCGCCGcCGCCGCCUgCuGCCu-- -3'
miRNA:   3'- guuaGGUGGU-GCGGCGGA-GuUGGuuu -5'
27532 5' -54.3 NC_005879.1 + 157 0.67 0.538255
Target:  5'- --uUCCACCcuucCGCCGCCcgacUCGgucACCAGAa -3'
miRNA:   3'- guuAGGUGGu---GCGGCGG----AGU---UGGUUU- -5'
27532 5' -54.3 NC_005879.1 + 37144 0.68 0.5051
Target:  5'- -uGUUgGCCACGCCGUCU-AGCCGu- -3'
miRNA:   3'- guUAGgUGGUGCGGCGGAgUUGGUuu -5'
27532 5' -54.3 NC_005879.1 + 27984 0.68 0.483491
Target:  5'- aAGUCCA-CACGCCGCgCUCuucuuucgcGCCGAAc -3'
miRNA:   3'- gUUAGGUgGUGCGGCG-GAGu--------UGGUUU- -5'
27532 5' -54.3 NC_005879.1 + 10896 0.69 0.472854
Target:  5'- ---aCCGCCGcCGCCGCCgCcGCCAc- -3'
miRNA:   3'- guuaGGUGGU-GCGGCGGaGuUGGUuu -5'
27532 5' -54.3 NC_005879.1 + 11490 0.69 0.462337
Target:  5'- --uUCCGCCAgagcCGCCGCCgCcGCCAu- -3'
miRNA:   3'- guuAGGUGGU----GCGGCGGaGuUGGUuu -5'
27532 5' -54.3 NC_005879.1 + 11256 0.69 0.441679
Target:  5'- --uUCCACCGcCGCCGCCgCcACUAAc -3'
miRNA:   3'- guuAGGUGGU-GCGGCGGaGuUGGUUu -5'
27532 5' -54.3 NC_005879.1 + 22956 1.05 0.001213
Target:  5'- uCAAUCCACCACGCCGCCUCAACCAAAu -3'
miRNA:   3'- -GUUAGGUGGUGCGGCGGAGUUGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.