miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27536 3' -55.8 NC_005879.1 + 10983 0.66 0.58758
Target:  5'- gGCGGCGGCGcGgcuaaCAGaGCCaUUGCgGCa -3'
miRNA:   3'- -UGCCGUCGU-Ca----GUUaCGGcAACGgCG- -5'
27536 3' -55.8 NC_005879.1 + 39188 0.66 0.565184
Target:  5'- cACGGUGGaCAGgccgCAAguaGCUGgacagGCCGCg -3'
miRNA:   3'- -UGCCGUC-GUCa---GUUa--CGGCaa---CGGCG- -5'
27536 3' -55.8 NC_005879.1 + 38432 0.67 0.510336
Target:  5'- cACcGC-GUuGUUGAUGCgGUUGCCGCa -3'
miRNA:   3'- -UGcCGuCGuCAGUUACGgCAACGGCG- -5'
27536 3' -55.8 NC_005879.1 + 14194 0.67 0.510336
Target:  5'- -gGGCuuucaauGUCAGcUGCCGcUGCCGCa -3'
miRNA:   3'- ugCCGucgu---CAGUU-ACGGCaACGGCG- -5'
27536 3' -55.8 NC_005879.1 + 11124 0.67 0.475374
Target:  5'- aACGGCGGCAacaacucuuccaacGUUggUGCgGggGCUGg -3'
miRNA:   3'- -UGCCGUCGU--------------CAGuuACGgCaaCGGCg -5'
27536 3' -55.8 NC_005879.1 + 33526 0.68 0.417989
Target:  5'- gUGGCGGCAGguagaugCGAUGaCGcaccUGCCGCc -3'
miRNA:   3'- uGCCGUCGUCa------GUUACgGCa---ACGGCG- -5'
27536 3' -55.8 NC_005879.1 + 33899 0.68 0.417989
Target:  5'- uACuGCAGCgaggAGUCAAUGCUc--GCCGCc -3'
miRNA:   3'- -UGcCGUCG----UCAGUUACGGcaaCGGCG- -5'
27536 3' -55.8 NC_005879.1 + 15200 0.7 0.336549
Target:  5'- aACGGCGGCGGUguuuugGCCGUgGCgaGCg -3'
miRNA:   3'- -UGCCGUCGUCAguua--CGGCAaCGg-CG- -5'
27536 3' -55.8 NC_005879.1 + 11316 0.73 0.21234
Target:  5'- gGCGGCGGCGGUaaUAGcGCCGUUuggugggacaacgcaGCUGCa -3'
miRNA:   3'- -UGCCGUCGUCA--GUUaCGGCAA---------------CGGCG- -5'
27536 3' -55.8 NC_005879.1 + 10846 0.77 0.123108
Target:  5'- gGCGGCGGCGGUUcagGCCGcacUGCCGg -3'
miRNA:   3'- -UGCCGUCGUCAGuuaCGGCa--ACGGCg -5'
27536 3' -55.8 NC_005879.1 + 36809 1.11 0.000379
Target:  5'- uACGGCAGCAGUCAAUGCCGUUGCCGCu -3'
miRNA:   3'- -UGCCGUCGUCAGUUACGGCAACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.