Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27536 | 5' | -54.9 | NC_005879.1 | + | 11415 | 0.66 | 0.649625 |
Target: 5'- -gGCAacgguaaUGGCGGCGGcGGCgGCUcUGg -3' miRNA: 3'- agCGUg------AUUGCCGCCaCCGgUGAuAC- -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 10976 | 0.67 | 0.581699 |
Target: 5'- gCGCGgUGGCGGCGGc-GCgGCUAa- -3' miRNA: 3'- aGCGUgAUUGCCGCCacCGgUGAUac -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 18666 | 0.67 | 0.559308 |
Target: 5'- gCGCAUUuAUGGCuGGUGG-CACUAa- -3' miRNA: 3'- aGCGUGAuUGCCG-CCACCgGUGAUac -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 10843 | 0.67 | 0.559308 |
Target: 5'- -gGCGgcGGCGGCGGUucaGGCCGCa--- -3' miRNA: 3'- agCGUgaUUGCCGCCA---CCGGUGauac -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 11826 | 0.68 | 0.515334 |
Target: 5'- aCGUACgucaGGUGGUGGCCAa---- -3' miRNA: 3'- aGCGUGauugCCGCCACCGGUgauac -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 17491 | 0.68 | 0.504553 |
Target: 5'- aUGCGCgauuCGGUcaggcaGGUGGCCAC-AUGg -3' miRNA: 3'- aGCGUGauu-GCCG------CCACCGGUGaUAC- -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 10717 | 0.69 | 0.462472 |
Target: 5'- -aGCGCUc-CuGCuGUGGCCACUGUGa -3' miRNA: 3'- agCGUGAuuGcCGcCACCGGUGAUAC- -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 10885 | 0.69 | 0.42231 |
Target: 5'- -aGCAUaGGCGGCGGcGGCgGCgGUGg -3' miRNA: 3'- agCGUGaUUGCCGCCaCCGgUGaUAC- -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 39178 | 0.7 | 0.4126 |
Target: 5'- cUGCACUGgacACGGUGGacaGGCCGCa--- -3' miRNA: 3'- aGCGUGAU---UGCCGCCa--CCGGUGauac -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 4633 | 0.74 | 0.236558 |
Target: 5'- gCGCACUGGuugacccgcagUGGUGGUGGCCAUa--- -3' miRNA: 3'- aGCGUGAUU-----------GCCGCCACCGGUGauac -5' |
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27536 | 5' | -54.9 | NC_005879.1 | + | 36846 | 1.1 | 0.000601 |
Target: 5'- gUCGCACUAACGGCGGUGGCCACUAUGg -3' miRNA: 3'- -AGCGUGAUUGCCGCCACCGGUGAUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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