miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27538	3'	-48.3	NC_005879.1	+	29643	0.66	0.947394
	Target:  5'- -cUGCCAUGCgCAGUugGGuGUUGA-GGCg -3' miRNA:   3'- caAUGGUACGgGUUA--UC-CAGUUaCCG- -5'
27538	3'	-48.3	NC_005879.1	+	39233	0.66	0.942195
	Target:  5'- --cACCGUGUCCAGUGcagu-AUGGCg -3' miRNA:   3'- caaUGGUACGGGUUAUccaguUACCG- -5'
27538	3'	-48.3	NC_005879.1	+	10735	0.66	0.924019
	Target:  5'- -cUACCAcgcuuacUGUCCGGUuuuGGUUAAcGGCa -3' miRNA:   3'- caAUGGU-------ACGGGUUAu--CCAGUUaCCG- -5'
27538	3'	-48.3	NC_005879.1	+	6798	0.67	0.918154
	Target:  5'- -cUGCCAUGCCCcAUugagucGGGUCGAa--- -3' miRNA:   3'- caAUGGUACGGGuUA------UCCAGUUaccg -5'
27538	3'	-48.3	NC_005879.1	+	11105	0.69	0.826246
	Target:  5'- -gUACUAUGCCuCAggAGG-CAAcGGCg -3' miRNA:   3'- caAUGGUACGG-GUuaUCCaGUUaCCG- -5'
27538	3'	-48.3	NC_005879.1	+	19937	0.72	0.646567
	Target:  5'- ---uCCGUGCCCu-UGGuGUUGAUGGCu -3' miRNA:   3'- caauGGUACGGGuuAUC-CAGUUACCG- -5'
27538	3'	-48.3	NC_005879.1	+	2293	0.82	0.20189
	Target:  5'- uUUACaCAggaagGCCCAAUGGGUCAA-GGCg -3' miRNA:   3'- cAAUG-GUa----CGGGUUAUCCAGUUaCCG- -5'
27538	3'	-48.3	NC_005879.1	+	39650	1.14	0.001365
	Target:  5'- cGUUACCAUGCCCAAUAGGUCAAUGGCa -3' miRNA:   3'- -CAAUGGUACGGGUUAUCCAGUUACCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home