Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27538 | 5' | -57.2 | NC_005879.1 | + | 9881 | 0.66 | 0.504046 |
Target: 5'- aCGCUuguaGCCCGUCcagugccGCGCCUUCAc -3' miRNA: 3'- cGCGGuaagUGGGCAG-------UGCGGGAGUu -5' |
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27538 | 5' | -57.2 | NC_005879.1 | + | 39443 | 0.66 | 0.473738 |
Target: 5'- -gGCC-UUCGCCCccacuUCGCGCCCaUCGu -3' miRNA: 3'- cgCGGuAAGUGGGc----AGUGCGGG-AGUu -5' |
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27538 | 5' | -57.2 | NC_005879.1 | + | 28628 | 0.67 | 0.443377 |
Target: 5'- -aGCCAUUgUACCgCGUCAggcUGCUCUCGAa -3' miRNA: 3'- cgCGGUAA-GUGG-GCAGU---GCGGGAGUU- -5' |
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27538 | 5' | -57.2 | NC_005879.1 | + | 20129 | 0.68 | 0.395326 |
Target: 5'- aGCGUCGUcgccuuugUCGCCUuuGUCucccuuCGCCCUCAc -3' miRNA: 3'- -CGCGGUA--------AGUGGG--CAGu-----GCGGGAGUu -5' |
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27538 | 5' | -57.2 | NC_005879.1 | + | 35088 | 0.7 | 0.302171 |
Target: 5'- uGCGC---UCGCCUGUCAUGCCUuuuUCAGg -3' miRNA: 3'- -CGCGguaAGUGGGCAGUGCGGG---AGUU- -5' |
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27538 | 5' | -57.2 | NC_005879.1 | + | 39685 | 1.08 | 0.000468 |
Target: 5'- uGCGCCAUUCACCCGUCACGCCCUCAAg -3' miRNA: 3'- -CGCGGUAAGUGGGCAGUGCGGGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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