miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2754 3' -56.9 NC_001491.2 + 95159 0.69 0.686634
Target:  5'- uUGcGUCCAUGgCuAUAACCcGGGGGCa -3'
miRNA:   3'- uAC-CGGGUACgGuUGUUGGaCCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 57958 0.69 0.666067
Target:  5'- cUGG-CCAUGCCGGCcacCCUGGcucuGGCc -3'
miRNA:   3'- uACCgGGUACGGUUGuu-GGACCu---CCG- -5'
2754 3' -56.9 NC_001491.2 + 68881 0.69 0.654703
Target:  5'- -cGGCCC--GCCAuagagccgccgcaGCGGCCauagacacguUGGAGGCg -3'
miRNA:   3'- uaCCGGGuaCGGU-------------UGUUGG----------ACCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 17196 0.69 0.645388
Target:  5'- -gGGCCCGcGCCAGCAaauagAUUUcGGAGGUc -3'
miRNA:   3'- uaCCGGGUaCGGUUGU-----UGGA-CCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 146607 0.7 0.624666
Target:  5'- -aGGCgCAggaggGCCucgaaGACGGCCUGGcAGGCc -3'
miRNA:   3'- uaCCGgGUa----CGG-----UUGUUGGACC-UCCG- -5'
2754 3' -56.9 NC_001491.2 + 125123 0.7 0.603966
Target:  5'- uUGGCCCccaccuucGCCGcagccGCGGCCggGGGGGCc -3'
miRNA:   3'- uACCGGGua------CGGU-----UGUUGGa-CCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 24271 0.71 0.562882
Target:  5'- -gGGCUgCAUGCCAuguACCUGGGcGGCc -3'
miRNA:   3'- uaCCGG-GUACGGUuguUGGACCU-CCG- -5'
2754 3' -56.9 NC_001491.2 + 116988 0.71 0.562882
Target:  5'- -gGGCCC-UGCCAcacGCGGCCgccucGGuGGCc -3'
miRNA:   3'- uaCCGGGuACGGU---UGUUGGa----CCuCCG- -5'
2754 3' -56.9 NC_001491.2 + 85034 0.71 0.552718
Target:  5'- -cGGCCCcguagCGAguGCCUGGGGGCa -3'
miRNA:   3'- uaCCGGGuacg-GUUguUGGACCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 50044 0.71 0.552718
Target:  5'- gGUGuCUCGUGCCAGCAcgguCCUgugGGAGGCc -3'
miRNA:   3'- -UACcGGGUACGGUUGUu---GGA---CCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 115924 0.72 0.522583
Target:  5'- -cGGCCCA--CCu-CAGCCaGGAGGCg -3'
miRNA:   3'- uaCCGGGUacGGuuGUUGGaCCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 147927 0.72 0.512677
Target:  5'- -gGGCUCGcGCCGAgAGCCgccggggcgGGAGGCc -3'
miRNA:   3'- uaCCGGGUaCGGUUgUUGGa--------CCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 145313 0.72 0.502849
Target:  5'- -cGGCCCGggagaGCCGGCGGCCgacGGGGUu -3'
miRNA:   3'- uaCCGGGUa----CGGUUGUUGGac-CUCCG- -5'
2754 3' -56.9 NC_001491.2 + 86190 0.72 0.502849
Target:  5'- aAUGGCgaGUGCCAcggcuucuaGCAGCUcGGGGGCg -3'
miRNA:   3'- -UACCGggUACGGU---------UGUUGGaCCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 110866 0.72 0.501871
Target:  5'- -cGGCCCAUGCgGccuagauGCAGCCUGcGGGa -3'
miRNA:   3'- uaCCGGGUACGgU-------UGUUGGACcUCCg -5'
2754 3' -56.9 NC_001491.2 + 115683 0.72 0.493104
Target:  5'- -gGGaCCCAUGCCAGCcgagggccccGACCgucGGGGCg -3'
miRNA:   3'- uaCC-GGGUACGGUUG----------UUGGac-CUCCG- -5'
2754 3' -56.9 NC_001491.2 + 116313 0.73 0.455042
Target:  5'- -gGGCCCggGCCu-CGGCCUGGAcgucacccaGGCc -3'
miRNA:   3'- uaCCGGGuaCGGuuGUUGGACCU---------CCG- -5'
2754 3' -56.9 NC_001491.2 + 141810 0.74 0.384034
Target:  5'- -cGGCCCAgccaUGCCccacgGACAGCCgUGcGGGGCg -3'
miRNA:   3'- uaCCGGGU----ACGG-----UUGUUGG-AC-CUCCG- -5'
2754 3' -56.9 NC_001491.2 + 101743 0.74 0.379011
Target:  5'- cUGGCCgGUaaacuguaugugGCCAACAGCCuccugcgagagggguUGGAGGCc -3'
miRNA:   3'- uACCGGgUA------------CGGUUGUUGG---------------ACCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 147496 0.77 0.27866
Target:  5'- gGUGGCCCGgggugGCCAcccuGC-GCUUGGGGGCc -3'
miRNA:   3'- -UACCGGGUa----CGGU----UGuUGGACCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.