miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2754 3' -56.9 NC_001491.2 + 110866 0.72 0.501871
Target:  5'- -cGGCCCAUGCgGccuagauGCAGCCUGcGGGa -3'
miRNA:   3'- uaCCGGGUACGgU-------UGUUGGACcUCCg -5'
2754 3' -56.9 NC_001491.2 + 114683 0.67 0.775802
Target:  5'- -gGGCCCAgGCCGAgGGCCUcG-GGUu -3'
miRNA:   3'- uaCCGGGUaCGGUUgUUGGAcCuCCG- -5'
2754 3' -56.9 NC_001491.2 + 115683 0.72 0.493104
Target:  5'- -gGGaCCCAUGCCAGCcgagggccccGACCgucGGGGCg -3'
miRNA:   3'- uaCC-GGGUACGGUUG----------UUGGac-CUCCG- -5'
2754 3' -56.9 NC_001491.2 + 115924 0.72 0.522583
Target:  5'- -cGGCCCA--CCu-CAGCCaGGAGGCg -3'
miRNA:   3'- uaCCGGGUacGGuuGUUGGaCCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 116313 0.73 0.455042
Target:  5'- -gGGCCCggGCCu-CGGCCUGGAcgucacccaGGCc -3'
miRNA:   3'- uaCCGGGuaCGGuuGUUGGACCU---------CCG- -5'
2754 3' -56.9 NC_001491.2 + 116363 0.66 0.829762
Target:  5'- gGUGGCCCGgaccguggcGCCGcuggugcgcuACAacGCCgaGGGGGCc -3'
miRNA:   3'- -UACCGGGUa--------CGGU----------UGU--UGGa-CCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 116826 0.66 0.811538
Target:  5'- -cGGCCCAggccgccgcUGCCGcggccagccagcaACAGCCc-GAGGCc -3'
miRNA:   3'- uaCCGGGU---------ACGGU-------------UGUUGGacCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 116988 0.71 0.562882
Target:  5'- -gGGCCC-UGCCAcacGCGGCCgccucGGuGGCc -3'
miRNA:   3'- uaCCGGGuACGGU---UGUUGGa----CCuCCG- -5'
2754 3' -56.9 NC_001491.2 + 121514 0.66 0.846365
Target:  5'- -gGGuCCCccGCCGGgGGCgaGGGGGUc -3'
miRNA:   3'- uaCC-GGGuaCGGUUgUUGgaCCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 125123 0.7 0.603966
Target:  5'- uUGGCCCccaccuucGCCGcagccGCGGCCggGGGGGCc -3'
miRNA:   3'- uACCGGGua------CGGU-----UGUUGGa-CCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 125597 0.66 0.83816
Target:  5'- -cGGCCgcUGCCGcggcgGCGGCCgucGGAGGg -3'
miRNA:   3'- uaCCGGguACGGU-----UGUUGGa--CCUCCg -5'
2754 3' -56.9 NC_001491.2 + 138113 0.67 0.803497
Target:  5'- -cGGCCCccccgGCC-GCGGCUgcggcgaaggUGGGGGCc -3'
miRNA:   3'- uaCCGGGua---CGGuUGUUGG----------ACCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 141583 0.66 0.83816
Target:  5'- -gGGCCCugcGCCcguACcuGGCCcGGGGGCc -3'
miRNA:   3'- uaCCGGGua-CGGu--UG--UUGGaCCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 141810 0.74 0.384034
Target:  5'- -cGGCCCAgccaUGCCccacgGACAGCCgUGcGGGGCg -3'
miRNA:   3'- uaCCGGGU----ACGG-----UUGUUGG-AC-CUCCG- -5'
2754 3' -56.9 NC_001491.2 + 145112 0.68 0.756665
Target:  5'- -cGGaCCCgggGUGCCGGgGACCcuccgcccggGGAGGCc -3'
miRNA:   3'- uaCC-GGG---UACGGUUgUUGGa---------CCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 145313 0.72 0.502849
Target:  5'- -cGGCCCGggagaGCCGGCGGCCgacGGGGUu -3'
miRNA:   3'- uaCCGGGUa----CGGUUGUUGGac-CUCCG- -5'
2754 3' -56.9 NC_001491.2 + 146397 0.66 0.854371
Target:  5'- cUGGCCgCG-GCagCGGCGGCCUGGgccGGGUa -3'
miRNA:   3'- uACCGG-GUaCG--GUUGUUGGACC---UCCG- -5'
2754 3' -56.9 NC_001491.2 + 146607 0.7 0.624666
Target:  5'- -aGGCgCAggaggGCCucgaaGACGGCCUGGcAGGCc -3'
miRNA:   3'- uaCCGgGUa----CGG-----UUGUUGGACC-UCCG- -5'
2754 3' -56.9 NC_001491.2 + 147496 0.77 0.27866
Target:  5'- gGUGGCCCGgggugGCCAcccuGC-GCUUGGGGGCc -3'
miRNA:   3'- -UACCGGGUa----CGGU----UGuUGGACCUCCG- -5'
2754 3' -56.9 NC_001491.2 + 147927 0.72 0.512677
Target:  5'- -gGGCUCGcGCCGAgAGCCgccggggcgGGAGGCc -3'
miRNA:   3'- uaCCGGGUaCGGUUgUUGGa--------CCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.