Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2754 | 3' | -56.9 | NC_001491.2 | + | 101743 | 0.74 | 0.379011 |
Target: 5'- cUGGCCgGUaaacuguaugugGCCAACAGCCuccugcgagagggguUGGAGGCc -3' miRNA: 3'- uACCGGgUA------------CGGUUGUUGG---------------ACCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 95159 | 0.69 | 0.686634 |
Target: 5'- uUGcGUCCAUGgCuAUAACCcGGGGGCa -3' miRNA: 3'- uAC-CGGGUACgGuUGUUGGaCCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 86190 | 0.72 | 0.502849 |
Target: 5'- aAUGGCgaGUGCCAcggcuucuaGCAGCUcGGGGGCg -3' miRNA: 3'- -UACCGggUACGGU---------UGUUGGaCCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 85722 | 0.66 | 0.83816 |
Target: 5'- -cGGCCUgcGCCGccACAcgucUCUGGGGGUg -3' miRNA: 3'- uaCCGGGuaCGGU--UGUu---GGACCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 85672 | 0.67 | 0.766295 |
Target: 5'- cGUGGCCCAcGuCCAGcCAGUCgagGGGGGUg -3' miRNA: 3'- -UACCGGGUaC-GGUU-GUUGGa--CCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 85533 | 0.66 | 0.820313 |
Target: 5'- -gGGgCCGcuguuaacaaaucUGCCAG-AAUCUGGGGGCu -3' miRNA: 3'- uaCCgGGU-------------ACGGUUgUUGGACCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 85034 | 0.71 | 0.552718 |
Target: 5'- -cGGCCCcguagCGAguGCCUGGGGGCa -3' miRNA: 3'- uaCCGGGuacg-GUUguUGGACCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 81935 | 0.67 | 0.794413 |
Target: 5'- uUGGCagCAUGUgA--AACUUGGAGGCg -3' miRNA: 3'- uACCGg-GUACGgUugUUGGACCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 68881 | 0.69 | 0.654703 |
Target: 5'- -cGGCCC--GCCAuagagccgccgcaGCGGCCauagacacguUGGAGGCg -3' miRNA: 3'- uaCCGGGuaCGGU-------------UGUUGG----------ACCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 57958 | 0.69 | 0.666067 |
Target: 5'- cUGG-CCAUGCCGGCcacCCUGGcucuGGCc -3' miRNA: 3'- uACCgGGUACGGUUGuu-GGACCu---CCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 56531 | 0.68 | 0.756665 |
Target: 5'- -aGGgCUGUGUCGGCAGCCaUGaccGAGGCu -3' miRNA: 3'- uaCCgGGUACGGUUGUUGG-AC---CUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 50044 | 0.71 | 0.552718 |
Target: 5'- gGUGuCUCGUGCCAGCAcgguCCUgugGGAGGCc -3' miRNA: 3'- -UACcGGGUACGGUUGUu---GGA---CCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 42624 | 0.69 | 0.686634 |
Target: 5'- -aGGCCCGaacucGCCAugAACCUuaugcggugccaGGuGGCg -3' miRNA: 3'- uaCCGGGUa----CGGUugUUGGA------------CCuCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 42565 | 0.69 | 0.693792 |
Target: 5'- gGUGGUagCCAgcacUGCCGcguauaucucggccGCAGCCUGGgcGGGCu -3' miRNA: 3'- -UACCG--GGU----ACGGU--------------UGUUGGACC--UCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 35995 | 0.67 | 0.785178 |
Target: 5'- -cGGCCCuuauUGCCAACccccUCUGGGcccuGGCc -3' miRNA: 3'- uaCCGGGu---ACGGUUGuu--GGACCU----CCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 33618 | 0.66 | 0.821181 |
Target: 5'- -aGGCCCGgcagGCUAGaaacugUAGCCUGGGGa- -3' miRNA: 3'- uaCCGGGUa---CGGUU------GUUGGACCUCcg -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 24271 | 0.71 | 0.562882 |
Target: 5'- -gGGCUgCAUGCCAuguACCUGGGcGGCc -3' miRNA: 3'- uaCCGG-GUACGGUuguUGGACCU-CCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 20233 | 0.68 | 0.750832 |
Target: 5'- uUGGCCCuggGCCuaaauguaccauacACAACCUccgggcuaaugGGAGGUg -3' miRNA: 3'- uACCGGGua-CGGu-------------UGUUGGA-----------CCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 17196 | 0.69 | 0.645388 |
Target: 5'- -gGGCCCGcGCCAGCAaauagAUUUcGGAGGUc -3' miRNA: 3'- uaCCGGGUaCGGUUGU-----UGGA-CCUCCG- -5' |
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2754 | 3' | -56.9 | NC_001491.2 | + | 5596 | 0.67 | 0.803497 |
Target: 5'- cAUGcGCCUggGCCAACGc---GGAGGCg -3' miRNA: 3'- -UAC-CGGGuaCGGUUGUuggaCCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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