miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27544 5' -56.8 NC_005881.1 + 135045 0.66 0.903355
Target:  5'- aCACCugCACcauCCAUCGGUAG-GGCg -3'
miRNA:   3'- -GUGGugGUGuu-GGUGGUCGUCgUCGa -5'
27544 5' -56.8 NC_005881.1 + 24058 0.66 0.903355
Target:  5'- aCACUACCAaAGCCAUCuaaacagaAGCAGgAGCc -3'
miRNA:   3'- -GUGGUGGUgUUGGUGG--------UCGUCgUCGa -5'
27544 5' -56.8 NC_005881.1 + 146862 0.66 0.897012
Target:  5'- aGCCACCuccaccaacaACAACaucagCACCAGCAGUugauguGGCa -3'
miRNA:   3'- gUGGUGG----------UGUUG-----GUGGUCGUCG------UCGa -5'
27544 5' -56.8 NC_005881.1 + 125016 0.66 0.897012
Target:  5'- uCACCuCCAUAAUCugCGGUuGCGGUc -3'
miRNA:   3'- -GUGGuGGUGUUGGugGUCGuCGUCGa -5'
27544 5' -56.8 NC_005881.1 + 144725 0.66 0.897012
Target:  5'- --aCAuCCGCAACCACCucuuuGCGGaUAGCg -3'
miRNA:   3'- gugGU-GGUGUUGGUGGu----CGUC-GUCGa -5'
27544 5' -56.8 NC_005881.1 + 197535 0.66 0.890442
Target:  5'- aCugUAUauaaGCAGCCGCCAGU-GUAGCa -3'
miRNA:   3'- -GugGUGg---UGUUGGUGGUCGuCGUCGa -5'
27544 5' -56.8 NC_005881.1 + 179373 0.67 0.875922
Target:  5'- gACCugUGCccguuaGACUgggaaagaggcguGCCAGCAGCGGCg -3'
miRNA:   3'- gUGGugGUG------UUGG-------------UGGUCGUCGUCGa -5'
27544 5' -56.8 NC_005881.1 + 3664 0.67 0.875922
Target:  5'- gACCugUGCccguuaGACUgggaaagaggcguGCCAGCAGCGGCg -3'
miRNA:   3'- gUGGugGUG------UUGG-------------UGGUCGUCGUCGa -5'
27544 5' -56.8 NC_005881.1 + 98756 0.67 0.868674
Target:  5'- cUACCACCACAgaaGCCACUaccacaaGGguGaCAGUUc -3'
miRNA:   3'- -GUGGUGGUGU---UGGUGG-------UCguC-GUCGA- -5'
27544 5' -56.8 NC_005881.1 + 181974 0.67 0.854331
Target:  5'- aCGCUACCuAguGCCagagaACUGGCGGCGGCa -3'
miRNA:   3'- -GUGGUGG-UguUGG-----UGGUCGUCGUCGa -5'
27544 5' -56.8 NC_005881.1 + 1062 0.67 0.854331
Target:  5'- aCGCUACCuAguGCCagagaACUGGCGGCGGCa -3'
miRNA:   3'- -GUGGUGG-UguUGG-----UGGUCGUCGUCGa -5'
27544 5' -56.8 NC_005881.1 + 96652 0.67 0.846493
Target:  5'- cCACCACCACAACCACaccuGCGcCAa-- -3'
miRNA:   3'- -GUGGUGGUGUUGGUGgu--CGUcGUcga -5'
27544 5' -56.8 NC_005881.1 + 134786 0.67 0.8352
Target:  5'- aACCACCACAcaagcuccuccuccACCuaucguuauuaauACCA-CAGCAGCa -3'
miRNA:   3'- gUGGUGGUGU--------------UGG-------------UGGUcGUCGUCGa -5'
27544 5' -56.8 NC_005881.1 + 158529 0.68 0.804576
Target:  5'- uUACCACCucugACAacACCGCCAGUggAGUGGUUg -3'
miRNA:   3'- -GUGGUGG----UGU--UGGUGGUCG--UCGUCGA- -5'
27544 5' -56.8 NC_005881.1 + 171427 0.69 0.78668
Target:  5'- gGCCACCACAAUaaacaCAGCGuCAGCa -3'
miRNA:   3'- gUGGUGGUGUUGgug--GUCGUcGUCGa -5'
27544 5' -56.8 NC_005881.1 + 146812 0.69 0.739702
Target:  5'- gCACCACCaACGuuuggguuuaacACCACCAGUAcUAGCa -3'
miRNA:   3'- -GUGGUGG-UGU------------UGGUGGUCGUcGUCGa -5'
27544 5' -56.8 NC_005881.1 + 93126 0.72 0.608498
Target:  5'- aCAUCACCaAUGACCAaaugguuCCAGCAcGCAGCg -3'
miRNA:   3'- -GUGGUGG-UGUUGGU-------GGUCGU-CGUCGa -5'
27544 5' -56.8 NC_005881.1 + 506 0.73 0.539408
Target:  5'- uCACCACCGcCAACCAauUCAGCAGUgacAGUUa -3'
miRNA:   3'- -GUGGUGGU-GUUGGU--GGUCGUCG---UCGA- -5'
27544 5' -56.8 NC_005881.1 + 182530 0.73 0.539408
Target:  5'- uCACCACCGcCAACCAauUCAGCAGUgacAGUUa -3'
miRNA:   3'- -GUGGUGGU-GUUGGU--GGUCGUCG---UCGA- -5'
27544 5' -56.8 NC_005881.1 + 1755 0.76 0.360158
Target:  5'- uCGCCGCCAU-ACUACagAGCAGCAGCg -3'
miRNA:   3'- -GUGGUGGUGuUGGUGg-UCGUCGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.