miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27550 5' -44.3 NC_005881.1 + 202996 0.66 1
Target:  5'- gCCCUGUuugcaauauggaaUGGCCAa--UGAGAAAGGa- -3'
miRNA:   3'- -GGGAUA-------------ACCGGUacaACUCUUUUUgg -5'
27550 5' -44.3 NC_005881.1 + 188780 0.66 1
Target:  5'- gCCCUGUuugcaauauggaaUGGCCAa--UGAGAAAGGa- -3'
miRNA:   3'- -GGGAUA-------------ACCGGUacaACUCUUUUUgg -5'
27550 5' -44.3 NC_005881.1 + 168159 0.68 0.999999
Target:  5'- -----aUGGCCAUGUcGGGAAAuugguucaagaaacuAACCa -3'
miRNA:   3'- gggauaACCGGUACAaCUCUUU---------------UUGG- -5'
27550 5' -44.3 NC_005881.1 + 18890 0.67 0.999999
Target:  5'- gCCaaggUGUUGGCCAUGaUGAu---AACCa -3'
miRNA:   3'- -GGg---AUAACCGGUACaACUcuuuUUGG- -5'
27550 5' -44.3 NC_005881.1 + 114884 0.68 0.999998
Target:  5'- aCCCggagAUUGGU--UGUUGGGAGAuuCUc -3'
miRNA:   3'- -GGGa---UAACCGguACAACUCUUUuuGG- -5'
27550 5' -44.3 NC_005881.1 + 163594 0.69 0.999994
Target:  5'- aUCUUGUUucauuuguuucGGCCAUGU--AGAAAAACUa -3'
miRNA:   3'- -GGGAUAA-----------CCGGUACAacUCUUUUUGG- -5'
27550 5' -44.3 NC_005881.1 + 60313 0.69 0.999989
Target:  5'- uUCUAUUGGCgGca--GGGAAGAGCCu -3'
miRNA:   3'- gGGAUAACCGgUacaaCUCUUUUUGG- -5'
27550 5' -44.3 NC_005881.1 + 7073 0.69 0.999978
Target:  5'- uCCCg---GGCUuuuuaauucUGUUGAGAuuGACCu -3'
miRNA:   3'- -GGGauaaCCGGu--------ACAACUCUuuUUGG- -5'
27550 5' -44.3 NC_005881.1 + 175963 0.69 0.999978
Target:  5'- uCCCg---GGCUuuuuaauucUGUUGAGAuuGACCu -3'
miRNA:   3'- -GGGauaaCCGGu--------ACAACUCUuuUUGG- -5'
27550 5' -44.3 NC_005881.1 + 106336 0.69 0.999978
Target:  5'- cCUCUAaagccacGGCCAUGUUGAaAAAGGCa -3'
miRNA:   3'- -GGGAUaa-----CCGGUACAACUcUUUUUGg -5'
27550 5' -44.3 NC_005881.1 + 27401 0.7 0.99997
Target:  5'- cUCCUAUUGGUacaagauugcuUccGUUGAGAAGuGACCu -3'
miRNA:   3'- -GGGAUAACCG-----------GuaCAACUCUUU-UUGG- -5'
27550 5' -44.3 NC_005881.1 + 198216 0.74 0.997833
Target:  5'- aCUCUAgUGGCCAa--UGAGAGAAGCg -3'
miRNA:   3'- -GGGAUaACCGGUacaACUCUUUUUGg -5'
27550 5' -44.3 NC_005881.1 + 193560 0.74 0.997833
Target:  5'- aCUCUAgUGGCCAa--UGAGAGAAGCg -3'
miRNA:   3'- -GGGAUaACCGGUacaACUCUUUUUGg -5'
27550 5' -44.3 NC_005881.1 + 169697 0.82 0.887577
Target:  5'- -aCUGUgGGCUuuUGUUGAGAGAAGCCg -3'
miRNA:   3'- ggGAUAaCCGGu-ACAACUCUUUUUGG- -5'
27550 5' -44.3 NC_005881.1 + 160071 1.18 0.019335
Target:  5'- uCCCUAUUGGCCAUGUUGAGAAAAACCg -3'
miRNA:   3'- -GGGAUAACCGGUACAACUCUUUUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.