miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27551 5' -59.5 NC_005881.1 + 134721 0.66 0.851393
Target:  5'- gCCaCCAACUCCaCUC-AGGCgCCUCCUCc -3'
miRNA:   3'- -GG-GGUUGGGGgGAGaUUUG-GGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 2987 0.66 0.843786
Target:  5'- aCCCCccCCCCCC------CCCCCCa- -3'
miRNA:   3'- -GGGGuuGGGGGGagauuuGGGGGGag -5'
27551 5' -59.5 NC_005881.1 + 180049 0.66 0.843786
Target:  5'- aCCCCccCCCCCC------CCCCCCa- -3'
miRNA:   3'- -GGGGuuGGGGGGagauuuGGGGGGag -5'
27551 5' -59.5 NC_005881.1 + 193405 0.66 0.828052
Target:  5'- gCUCUGGCUCCaCCUC-AGGCUCCuCCUCc -3'
miRNA:   3'- -GGGGUUGGGG-GGAGaUUUGGGG-GGAG- -5'
27551 5' -59.5 NC_005881.1 + 198372 0.66 0.828052
Target:  5'- gCUCUGGCUCCaCCUC-AGGCUCCuCCUCc -3'
miRNA:   3'- -GGGGUUGGGG-GGAGaUUUGGGG-GGAG- -5'
27551 5' -59.5 NC_005881.1 + 188726 0.66 0.819939
Target:  5'- -aCCAACCCacguaaaCUCUuGACCUCUCUCu -3'
miRNA:   3'- ggGGUUGGGgg-----GAGAuUUGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 203050 0.66 0.819939
Target:  5'- -aCCAACCCacguaaaCUCUuGACCUCUCUCu -3'
miRNA:   3'- ggGGUUGGGgg-----GAGAuUUGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 28291 0.68 0.759209
Target:  5'- aCCC-AUCCCauaaUGAACCCUCCUCa -3'
miRNA:   3'- gGGGuUGGGGggagAUUUGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 125685 0.68 0.722085
Target:  5'- cCCCCAACUCCCUcccCUAAcUCCUCCa- -3'
miRNA:   3'- -GGGGUUGGGGGGa--GAUUuGGGGGGag -5'
27551 5' -59.5 NC_005881.1 + 22 0.74 0.396994
Target:  5'- cCCCCAuccuCCCCaCCUCcuccCCCUCCUCu -3'
miRNA:   3'- -GGGGUu---GGGG-GGAGauuuGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 183014 0.74 0.396994
Target:  5'- cCCCCAuccuCCCCaCCUCcuccCCCUCCUCu -3'
miRNA:   3'- -GGGGUu---GGGG-GGAGauuuGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 184365 0.75 0.335017
Target:  5'- uCCCCAccaccucACCaCCCC-CUAAACCCCuCCUa -3'
miRNA:   3'- -GGGGU-------UGG-GGGGaGAUUUGGGG-GGAg -5'
27551 5' -59.5 NC_005881.1 + 207412 0.75 0.335017
Target:  5'- uCCCCAccaccucACCaCCCC-CUAAACCCCuCCUa -3'
miRNA:   3'- -GGGGU-------UGG-GGGGaGAUUUGGGG-GGAg -5'
27551 5' -59.5 NC_005881.1 + 184413 0.77 0.281676
Target:  5'- aCCCCGaugACCCCauggggucgaCCUUU-GACCCCCCUCu -3'
miRNA:   3'- -GGGGU---UGGGG----------GGAGAuUUGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 207364 0.77 0.281676
Target:  5'- aCCCCGaugACCCCauggggucgaCCUUU-GACCCCCCUCu -3'
miRNA:   3'- -GGGGU---UGGGG----------GGAGAuUUGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 207439 1.1 0.001727
Target:  5'- uCCCCAACCCCCCUCUAAACCCCCCUCu -3'
miRNA:   3'- -GGGGUUGGGGGGAGAUUUGGGGGGAG- -5'
27551 5' -59.5 NC_005881.1 + 184338 1.1 0.001727
Target:  5'- uCCCCAACCCCCCUCUAAACCCCCCUCu -3'
miRNA:   3'- -GGGGUUGGGGGGAGAUUUGGGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.