miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27552 5' -53.4 NC_005881.1 + 4562 0.66 0.981355
Target:  5'- -aAAUUCCUuggCCCCCAUGuGGUUuuuUUAa -3'
miRNA:   3'- aaUUGAGGA---GGGGGUACuCCAGu--AGU- -5'
27552 5' -53.4 NC_005881.1 + 178475 0.66 0.981355
Target:  5'- -aAAUUCCUuggCCCCCAUGuGGUUuuuUUAa -3'
miRNA:   3'- aaUUGAGGA---GGGGGUACuCCAGu--AGU- -5'
27552 5' -53.4 NC_005881.1 + 165510 0.67 0.968527
Target:  5'- ---uUUCCggCCCUA-GAGGUCAUCAu -3'
miRNA:   3'- aauuGAGGagGGGGUaCUCCAGUAGU- -5'
27552 5' -53.4 NC_005881.1 + 197675 0.67 0.95449
Target:  5'- uUUAACUCCUCCCCCuuccgacuguaGUGAuuGGUUu--- -3'
miRNA:   3'- -AAUUGAGGAGGGGG-----------UACU--CCAGuagu -5'
27552 5' -53.4 NC_005881.1 + 194101 0.67 0.95449
Target:  5'- uUUAACUCCUCCCCCuuccgacuguaGUGAuuGGUUu--- -3'
miRNA:   3'- -AAUUGAGGAGGGGG-----------UACU--CCAGuagu -5'
27552 5' -53.4 NC_005881.1 + 184410 0.68 0.931684
Target:  5'- gUGACcCCgaugaCCCCAUGGGGUCGa-- -3'
miRNA:   3'- aAUUGaGGag---GGGGUACUCCAGUagu -5'
27552 5' -53.4 NC_005881.1 + 207367 0.68 0.931684
Target:  5'- gUGACcCCgaugaCCCCAUGGGGUCGa-- -3'
miRNA:   3'- aAUUGaGGag---GGGGUACUCCAGUagu -5'
27552 5' -53.4 NC_005881.1 + 158054 0.69 0.920857
Target:  5'- --cAC-CCUCUCCCAUGAGuGUCGaCAc -3'
miRNA:   3'- aauUGaGGAGGGGGUACUC-CAGUaGU- -5'
27552 5' -53.4 NC_005881.1 + 207130 0.7 0.852424
Target:  5'- -aAGgUCga-CCCCAUGGGGUCAUCGg -3'
miRNA:   3'- aaUUgAGgagGGGGUACUCCAGUAGU- -5'
27552 5' -53.4 NC_005881.1 + 184646 0.7 0.852424
Target:  5'- -aAGgUCga-CCCCAUGGGGUCAUCGg -3'
miRNA:   3'- aaUUgAGgagGGGGUACUCCAGUAGU- -5'
27552 5' -53.4 NC_005881.1 + 189915 0.71 0.819022
Target:  5'- --uACUCCUCCUaCCAUGgAGGUCAa-- -3'
miRNA:   3'- aauUGAGGAGGG-GGUAC-UCCAGUagu -5'
27552 5' -53.4 NC_005881.1 + 201861 0.71 0.819022
Target:  5'- --uACUCCUCCUaCCAUGgAGGUCAa-- -3'
miRNA:   3'- aauUGAGGAGGG-GGUAC-UCCAGUagu -5'
27552 5' -53.4 NC_005881.1 + 193421 0.71 0.810215
Target:  5'- -aGGCUCCUCCUCCAUcucagguugcaGAGGU-GUCAu -3'
miRNA:   3'- aaUUGAGGAGGGGGUA-----------CUCCAgUAGU- -5'
27552 5' -53.4 NC_005881.1 + 198356 0.71 0.810215
Target:  5'- -aGGCUCCUCCUCCAUcucagguugcaGAGGU-GUCAu -3'
miRNA:   3'- aaUUGAGGAGGGGGUA-----------CUCCAgUAGU- -5'
27552 5' -53.4 NC_005881.1 + 184451 1.06 0.008499
Target:  5'- cUUAACUCCUCCCCCAUGAGGUCAUCAa -3'
miRNA:   3'- -AAUUGAGGAGGGGGUACUCCAGUAGU- -5'
27552 5' -53.4 NC_005881.1 + 207326 1.06 0.008499
Target:  5'- cUUAACUCCUCCCCCAUGAGGUCAUCAa -3'
miRNA:   3'- -AAUUGAGGAGGGGGUACUCCAGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.