miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27553 3' -57.6 NC_005881.1 + 189796 0.66 0.912866
Target:  5'- ---cCCACCUCUUCUgAUCAAggUGCCa -3'
miRNA:   3'- aggaGGUGGAGGAGGgUGGUUa-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 205002 0.68 0.844483
Target:  5'- cCCUCC-CCacauuuuuucaaaUCUUCCCGCCuuucAUcCGCCa -3'
miRNA:   3'- aGGAGGuGG-------------AGGAGGGUGGu---UA-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 206020 0.67 0.860386
Target:  5'- gCCuaUCUACCgCCUCCU-UCAAUUGCCa -3'
miRNA:   3'- aGG--AGGUGGaGGAGGGuGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 205522 0.67 0.874748
Target:  5'- gUCUCCGCCUCCUuauuaucaCCCuCCucUUGCg -3'
miRNA:   3'- aGGAGGUGGAGGA--------GGGuGGuuAGCGg -5'
27553 3' -57.6 NC_005881.1 + 188755 0.67 0.888302
Target:  5'- cUCCUCCaAUCguagUCUCUUGCCAucCGCCa -3'
miRNA:   3'- -AGGAGG-UGGa---GGAGGGUGGUuaGCGG- -5'
27553 3' -57.6 NC_005881.1 + 14756 0.66 0.894766
Target:  5'- uUCUUCUuCCUCCUCCgAUUccUCGUCa -3'
miRNA:   3'- -AGGAGGuGGAGGAGGgUGGuuAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 158526 0.66 0.906457
Target:  5'- aUCUUaCCACCUCUgacaacaCCGCCAGUggagugguugugaUGCCa -3'
miRNA:   3'- -AGGA-GGUGGAGGag-----GGUGGUUA-------------GCGG- -5'
27553 3' -57.6 NC_005881.1 + 54637 0.66 0.90705
Target:  5'- aCUUCUGCCcCCUCCaaugguGCCAGU-GCCa -3'
miRNA:   3'- aGGAGGUGGaGGAGGg-----UGGUUAgCGG- -5'
27553 3' -57.6 NC_005881.1 + 125022 0.66 0.912866
Target:  5'- -gUUCCACCUUCUCCUGCUGuuguAUCaCCa -3'
miRNA:   3'- agGAGGUGGAGGAGGGUGGU----UAGcGG- -5'
27553 3' -57.6 NC_005881.1 + 134770 0.68 0.837423
Target:  5'- cUCCUCCACCcCCgccaaCCACCAcacaaGCUc -3'
miRNA:   3'- -AGGAGGUGGaGGag---GGUGGUuag--CGG- -5'
27553 3' -57.6 NC_005881.1 + 206929 0.68 0.804408
Target:  5'- aCCUCUGCaaaacuuaaaCUCCUCCCACCAcuuaaugCGgCa -3'
miRNA:   3'- aGGAGGUG----------GAGGAGGGUGGUua-----GCgG- -5'
27553 3' -57.6 NC_005881.1 + 73681 0.69 0.778099
Target:  5'- aUCUUCCAa-UCCUUCC-CCAAUUGUCu -3'
miRNA:   3'- -AGGAGGUggAGGAGGGuGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 783 0.8 0.248157
Target:  5'- cUCUUCCGCCgCCUCUCGCCAAUgCGUCc -3'
miRNA:   3'- -AGGAGGUGGaGGAGGGUGGUUA-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 124454 0.77 0.339842
Target:  5'- gUCCUCCACCUCC-CCCACCu----CCu -3'
miRNA:   3'- -AGGAGGUGGAGGaGGGUGGuuagcGG- -5'
27553 3' -57.6 NC_005881.1 + 27 0.76 0.402325
Target:  5'- aUCCUCCccACCUCCUCCCccuCCucucuucCGCCc -3'
miRNA:   3'- -AGGAGG--UGGAGGAGGGu--GGuua----GCGG- -5'
27553 3' -57.6 NC_005881.1 + 923 0.73 0.556121
Target:  5'- aUCCUCCACCgauUCCUCugCCAUCGuuacUCGCUc -3'
miRNA:   3'- -AGGAGGUGG---AGGAG--GGUGGUu---AGCGG- -5'
27553 3' -57.6 NC_005881.1 + 204888 0.71 0.67396
Target:  5'- aCCUCCccccCCUCCUCCuCAUUAAgacaUGCCg -3'
miRNA:   3'- aGGAGGu---GGAGGAGG-GUGGUUa---GCGG- -5'
27553 3' -57.6 NC_005881.1 + 198638 0.7 0.703195
Target:  5'- aCCUCCuACCgcaagaCCUa-CACCAAUCGCUa -3'
miRNA:   3'- aGGAGG-UGGa-----GGAggGUGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 206071 0.7 0.72242
Target:  5'- aCC-CCACCUCCUCCgAU---UCGUCa -3'
miRNA:   3'- aGGaGGUGGAGGAGGgUGguuAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 191083 0.69 0.750696
Target:  5'- gUCUUCCAUCUCCUgCCuuaugCAAUUGUCa -3'
miRNA:   3'- -AGGAGGUGGAGGAgGGug---GUUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.