Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27553 | 3' | -57.6 | NC_005881.1 | + | 185705 | 0.7 | 0.72242 |
Target: 5'- aCC-CCACCUCCUCCgAU---UCGUCa -3' miRNA: 3'- aGGaGGUGGAGGAGGgUGguuAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 185756 | 0.67 | 0.860386 |
Target: 5'- gCCuaUCUACCgCCUCCU-UCAAUUGCCa -3' miRNA: 3'- aGG--AGGUGGaGGAGGGuGGUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 186255 | 0.67 | 0.874748 |
Target: 5'- gUCUCCGCCUCCUuauuaucaCCCuCCucUUGCg -3' miRNA: 3'- aGGAGGUGGAGGA--------GGGuGGuuAGCGg -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 186774 | 0.68 | 0.844483 |
Target: 5'- cCCUCC-CCacauuuuuucaaaUCUUCCCGCCuuucAUcCGCCa -3' miRNA: 3'- aGGAGGuGG-------------AGGAGGGUGGu---UA-GCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 186888 | 0.71 | 0.67396 |
Target: 5'- aCCUCCccccCCUCCUCCuCAUUAAgacaUGCCg -3' miRNA: 3'- aGGAGGu---GGAGGAGG-GUGGUUa---GCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 187600 | 1.12 | 0.001837 |
Target: 5'- cUCCUCCACCUCCUCCCACCAAUCGCCg -3' miRNA: 3'- -AGGAGGUGGAGGAGGGUGGUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 188755 | 0.67 | 0.888302 |
Target: 5'- cUCCUCCaAUCguagUCUCUUGCCAucCGCCa -3' miRNA: 3'- -AGGAGG-UGGa---GGAGGGUGGUuaGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 189796 | 0.66 | 0.912866 |
Target: 5'- ---cCCACCUCUUCUgAUCAAggUGCCa -3' miRNA: 3'- aggaGGUGGAGGAGGgUGGUUa-GCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 191083 | 0.69 | 0.750696 |
Target: 5'- gUCUUCCAUCUCCUgCCuuaugCAAUUGUCa -3' miRNA: 3'- -AGGAGGUGGAGGAgGGug---GUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 193138 | 0.7 | 0.703195 |
Target: 5'- aCCUCCuACCgcaagaCCUa-CACCAAUCGCUa -3' miRNA: 3'- aGGAGG-UGGa-----GGAggGUGGUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 198638 | 0.7 | 0.703195 |
Target: 5'- aCCUCCuACCgcaagaCCUa-CACCAAUCGCUa -3' miRNA: 3'- aGGAGG-UGGa-----GGAggGUGGUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 200693 | 0.69 | 0.750696 |
Target: 5'- gUCUUCCAUCUCCUgCCuuaugCAAUUGUCa -3' miRNA: 3'- -AGGAGGUGGAGGAgGGug---GUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 201980 | 0.66 | 0.912866 |
Target: 5'- ---cCCACCUCUUCUgAUCAAggUGCCa -3' miRNA: 3'- aggaGGUGGAGGAGGgUGGUUa-GCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 203021 | 0.67 | 0.888302 |
Target: 5'- cUCCUCCaAUCguagUCUCUUGCCAucCGCCa -3' miRNA: 3'- -AGGAGG-UGGa---GGAGGGUGGUuaGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 204176 | 1.12 | 0.001837 |
Target: 5'- cUCCUCCACCUCCUCCCACCAAUCGCCg -3' miRNA: 3'- -AGGAGGUGGAGGAGGGUGGUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 204888 | 0.71 | 0.67396 |
Target: 5'- aCCUCCccccCCUCCUCCuCAUUAAgacaUGCCg -3' miRNA: 3'- aGGAGGu---GGAGGAGG-GUGGUUa---GCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 205002 | 0.68 | 0.844483 |
Target: 5'- cCCUCC-CCacauuuuuucaaaUCUUCCCGCCuuucAUcCGCCa -3' miRNA: 3'- aGGAGGuGG-------------AGGAGGGUGGu---UA-GCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 205522 | 0.67 | 0.874748 |
Target: 5'- gUCUCCGCCUCCUuauuaucaCCCuCCucUUGCg -3' miRNA: 3'- aGGAGGUGGAGGA--------GGGuGGuuAGCGg -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 206020 | 0.67 | 0.860386 |
Target: 5'- gCCuaUCUACCgCCUCCU-UCAAUUGCCa -3' miRNA: 3'- aGG--AGGUGGaGGAGGGuGGUUAGCGG- -5' |
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27553 | 3' | -57.6 | NC_005881.1 | + | 206071 | 0.7 | 0.72242 |
Target: 5'- aCC-CCACCUCCUCCgAU---UCGUCa -3' miRNA: 3'- aGGaGGUGGAGGAGGgUGguuAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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