miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27554 3' -43.7 NC_005881.1 + 124879 0.66 1
Target:  5'- gCCACAguUUGCaCUg--GUGGu--GGAGGu -3'
miRNA:   3'- -GGUGU--AAUG-GAauaUACCuauCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 207176 0.67 1
Target:  5'- gCCGCAUUAa-----GUGG-UGGGAGGa -3'
miRNA:   3'- -GGUGUAAUggaauaUACCuAUCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 184601 0.67 1
Target:  5'- gCCGCAUUAa-----GUGG-UGGGAGGa -3'
miRNA:   3'- -GGUGUAAUggaauaUACCuAUCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 201627 0.69 0.999999
Target:  5'- aCCAUug-ACCUcc-AUGG-UAGGAGGa -3'
miRNA:   3'- -GGUGuaaUGGAauaUACCuAUCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 186725 0.69 0.999999
Target:  5'- cCCAUGUUAUUaUUAUucAUGGggGGGGGGg -3'
miRNA:   3'- -GGUGUAAUGG-AAUA--UACCuaUCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 205051 0.69 0.999999
Target:  5'- cCCAUGUUAUUaUUAUucAUGGggGGGGGGg -3'
miRNA:   3'- -GGUGUAAUGG-AAUA--UACCuaUCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 190149 0.69 0.999999
Target:  5'- aCCAUug-ACCUcc-AUGG-UAGGAGGa -3'
miRNA:   3'- -GGUGuaaUGGAauaUACCuAUCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 63996 0.7 0.999979
Target:  5'- uUCACGUUuCCUUuuugAUGGA--GGAGGa -3'
miRNA:   3'- -GGUGUAAuGGAAua--UACCUauCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 207296 0.74 0.998805
Target:  5'- aCCu--UUACCUUAUAUGGAaguaauGGGGGc -3'
miRNA:   3'- -GGuguAAUGGAAUAUACCUau----CCUCC- -5'
27554 3' -43.7 NC_005881.1 + 184481 0.74 0.998805
Target:  5'- aCCu--UUACCUUAUAUGGAaguaauGGGGGc -3'
miRNA:   3'- -GGuguAAUGGAAUAUACCUau----CCUCC- -5'
27554 3' -43.7 NC_005881.1 + 184751 1.16 0.031064
Target:  5'- aCCACAUUACCUUAUAUGGAUAGGAGGu -3'
miRNA:   3'- -GGUGUAAUGGAAUAUACCUAUCCUCC- -5'
27554 3' -43.7 NC_005881.1 + 207025 1.16 0.031064
Target:  5'- aCCACAUUACCUUAUAUGGAUAGGAGGu -3'
miRNA:   3'- -GGUGUAAUGGAAUAUACCUAUCCUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.