miRNA display CGI

Results 1 - 12 of 12 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27554	3'	-43.7	NC_005881.1	+	184601	0.67	1
	Target:  5'- gCCGCAUUAa-----GUGG-UGGGAGGa -3' miRNA:   3'- -GGUGUAAUggaauaUACCuAUCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	207176	0.67	1
	Target:  5'- gCCGCAUUAa-----GUGG-UGGGAGGa -3' miRNA:   3'- -GGUGUAAUggaauaUACCuAUCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	124879	0.66	1
	Target:  5'- gCCACAguUUGCaCUg--GUGGu--GGAGGu -3' miRNA:   3'- -GGUGU--AAUG-GAauaUACCuauCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	201627	0.69	0.999999
	Target:  5'- aCCAUug-ACCUcc-AUGG-UAGGAGGa -3' miRNA:   3'- -GGUGuaaUGGAauaUACCuAUCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	186725	0.69	0.999999
	Target:  5'- cCCAUGUUAUUaUUAUucAUGGggGGGGGGg -3' miRNA:   3'- -GGUGUAAUGG-AAUA--UACCuaUCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	190149	0.69	0.999999
	Target:  5'- aCCAUug-ACCUcc-AUGG-UAGGAGGa -3' miRNA:   3'- -GGUGuaaUGGAauaUACCuAUCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	205051	0.69	0.999999
	Target:  5'- cCCAUGUUAUUaUUAUucAUGGggGGGGGGg -3' miRNA:   3'- -GGUGUAAUGG-AAUA--UACCuaUCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	63996	0.7	0.999979
	Target:  5'- uUCACGUUuCCUUuuugAUGGA--GGAGGa -3' miRNA:   3'- -GGUGUAAuGGAAua--UACCUauCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	184481	0.74	0.998805
	Target:  5'- aCCu--UUACCUUAUAUGGAaguaauGGGGGc -3' miRNA:   3'- -GGuguAAUGGAAUAUACCUau----CCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	207296	0.74	0.998805
	Target:  5'- aCCu--UUACCUUAUAUGGAaguaauGGGGGc -3' miRNA:   3'- -GGuguAAUGGAAUAUACCUau----CCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	207025	1.16	0.031064
	Target:  5'- aCCACAUUACCUUAUAUGGAUAGGAGGu -3' miRNA:   3'- -GGUGUAAUGGAAUAUACCUAUCCUCC- -5'
27554	3'	-43.7	NC_005881.1	+	184751	1.16	0.031064
	Target:  5'- aCCACAUUACCUUAUAUGGAUAGGAGGu -3' miRNA:   3'- -GGUGUAAUGGAAUAUACCUAUCCUCC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home