Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27555 | 3' | -55.8 | NC_005882.1 | + | 32604 | 0.67 | 0.47809 |
|
Target: 5'- aGGGCAuCGGUG--GCgCCUACUACGAu -3' miRNA: 3'- -CCUGUuGCCACaaCGgGGGUGGUGUU- -5' |
|||||||
| 27555 | 3' | -55.8 | NC_005882.1 | + | 30021 | 0.67 | 0.47809 |
|
Target: 5'- cGACuuCGGUuugGUaGCCgCCGCCGCGAu -3' miRNA: 3'- cCUGuuGCCA---CAaCGGgGGUGGUGUU- -5' |
|||||||
| 27555 | 3' | -55.8 | NC_005882.1 | + | 25771 | 0.67 | 0.467647 |
|
Target: 5'- aGACGAUGcgccGUGcgGCCCUUGCCACGAg -3' miRNA: 3'- cCUGUUGC----CACaaCGGGGGUGGUGUU- -5' |
|||||||
| 27555 | 3' | -55.8 | NC_005882.1 | + | 19506 | 0.68 | 0.437051 |
|
Target: 5'- uGGugGugGGUacgGUUGCCgCC-CCGCGu -3' miRNA: 3'- -CCugUugCCA---CAACGGgGGuGGUGUu -5' |
|||||||
| 27555 | 3' | -55.8 | NC_005882.1 | + | 185 | 0.69 | 0.385944 |
|
Target: 5'- uGGuCAACGGUggaaccgcguagcgGUUGUCCCCGCCcuugugguggggGCAAc -3' miRNA: 3'- -CCuGUUGCCA--------------CAACGGGGGUGG------------UGUU- -5' |
|||||||
| 27555 | 3' | -55.8 | NC_005882.1 | + | 285 | 1.08 | 0.000544 |
|
Target: 5'- uGGACAACGGUGUUGCCCCCACCACAAg -3' miRNA: 3'- -CCUGUUGCCACAACGGGGGUGGUGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home