miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27555 5' -55.3 NC_005882.1 + 17928 0.66 0.600607
Target:  5'- aGACCggcgaGCUGCGCGaggucgcgacGUUCCGCaCGUcGACc -3'
miRNA:   3'- -UUGG-----CGAUGCGC----------CAAGGUG-GCAaCUG- -5'
27555 5' -55.3 NC_005882.1 + 18202 0.66 0.566635
Target:  5'- aGAUCGCgcagGCGCuGGUgcuggUCACCGagGACa -3'
miRNA:   3'- -UUGGCGa---UGCG-CCAa----GGUGGCaaCUG- -5'
27555 5' -55.3 NC_005882.1 + 12063 0.66 0.555413
Target:  5'- gAGCCGCUggcGCGCGGa--CGCCGUcaGCg -3'
miRNA:   3'- -UUGGCGA---UGCGCCaagGUGGCAacUG- -5'
27555 5' -55.3 NC_005882.1 + 27628 0.66 0.544258
Target:  5'- cGGCCGCgcGCGCGGcgaCCGCCGacGAg -3'
miRNA:   3'- -UUGGCGa-UGCGCCaa-GGUGGCaaCUg -5'
27555 5' -55.3 NC_005882.1 + 12599 0.66 0.544258
Target:  5'- cGCCGCaGCGcCGGccgCCGCCGc-GACa -3'
miRNA:   3'- uUGGCGaUGC-GCCaa-GGUGGCaaCUG- -5'
27555 5' -55.3 NC_005882.1 + 22199 0.66 0.544258
Target:  5'- gAGCCGa-ACGaCGGa-CCGCUGUUGACg -3'
miRNA:   3'- -UUGGCgaUGC-GCCaaGGUGGCAACUG- -5'
27555 5' -55.3 NC_005882.1 + 27222 0.67 0.529867
Target:  5'- cACCGCgauCGCGGUcggcgcguaccucaUCUACCGcuacugGACg -3'
miRNA:   3'- uUGGCGau-GCGCCA--------------AGGUGGCaa----CUG- -5'
27555 5' -55.3 NC_005882.1 + 28913 0.67 0.522175
Target:  5'- uGCCGCU-CGCGaGaaCCGCCGUaaucGGCa -3'
miRNA:   3'- uUGGCGAuGCGC-CaaGGUGGCAa---CUG- -5'
27555 5' -55.3 NC_005882.1 + 4676 0.69 0.415131
Target:  5'- uGCCGCUGCgcgaacgagcugcaGCGGUU--GCUGUUGACc -3'
miRNA:   3'- uUGGCGAUG--------------CGCCAAggUGGCAACUG- -5'
27555 5' -55.3 NC_005882.1 + 1357 0.7 0.361966
Target:  5'- uGCgCGCUuccuCGCGG--CCACCGUUGAg -3'
miRNA:   3'- uUG-GCGAu---GCGCCaaGGUGGCAACUg -5'
27555 5' -55.3 NC_005882.1 + 28369 0.7 0.344467
Target:  5'- gAAUCGUgccucGCGCGGUggCCACCGccgaugUGACg -3'
miRNA:   3'- -UUGGCGa----UGCGCCAa-GGUGGCa-----ACUG- -5'
27555 5' -55.3 NC_005882.1 + 27576 0.71 0.295682
Target:  5'- cGCCGCgcGCGCGG--CCGCCGgcaUGGCg -3'
miRNA:   3'- uUGGCGa-UGCGCCaaGGUGGCa--ACUG- -5'
27555 5' -55.3 NC_005882.1 + 30158 0.72 0.25927
Target:  5'- cGCCGCUacggGCGUGGUUCCAacaaCGccGACg -3'
miRNA:   3'- uUGGCGA----UGCGCCAAGGUg---GCaaCUG- -5'
27555 5' -55.3 NC_005882.1 + 15742 0.76 0.140646
Target:  5'- cAACCGCUACgGCGGcgUCGCCGU-GGCg -3'
miRNA:   3'- -UUGGCGAUG-CGCCaaGGUGGCAaCUG- -5'
27555 5' -55.3 NC_005882.1 + 28327 0.77 0.121709
Target:  5'- aGACCGcCUGCGCGG--CCGCCGgcGGCa -3'
miRNA:   3'- -UUGGC-GAUGCGCCaaGGUGGCaaCUG- -5'
27555 5' -55.3 NC_005882.1 + 10082 0.77 0.121709
Target:  5'- uGAUCGCUACGCGGUUCaGCCag-GACg -3'
miRNA:   3'- -UUGGCGAUGCGCCAAGgUGGcaaCUG- -5'
27555 5' -55.3 NC_005882.1 + 16981 0.85 0.029708
Target:  5'- cGGCCGCUGC-CGGUgUCCGCCGUUGAUa -3'
miRNA:   3'- -UUGGCGAUGcGCCA-AGGUGGCAACUG- -5'
27555 5' -55.3 NC_005882.1 + 249 1.06 0.000848
Target:  5'- cAACCGCUACGCGGUUCCACCGUUGACc -3'
miRNA:   3'- -UUGGCGAUGCGCCAAGGUGGCAACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.