miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27556 5' -55 NC_005882.1 + 9887 0.65 0.591901
Target:  5'- -gCUGgUCgGGCAgaUCGCCGACGCGa-- -3'
miRNA:   3'- aaGGCgAG-CUGU--AGCGGUUGCGCauu -5'
27556 5' -55 NC_005882.1 + 6968 0.66 0.557647
Target:  5'- ---aGCUCGACGauaUCGCCAccaugaGCGUGAa -3'
miRNA:   3'- aaggCGAGCUGU---AGCGGUug----CGCAUU- -5'
27556 5' -55 NC_005882.1 + 17177 0.66 0.535124
Target:  5'- aUCCGCUuuaaaagcggcgCGACcagCGCCuGCGCGUc- -3'
miRNA:   3'- aAGGCGA------------GCUGua-GCGGuUGCGCAuu -5'
27556 5' -55 NC_005882.1 + 8002 0.67 0.523981
Target:  5'- --gCGCUCGACGUUGCCGcgAUGCc--- -3'
miRNA:   3'- aagGCGAGCUGUAGCGGU--UGCGcauu -5'
27556 5' -55 NC_005882.1 + 1911 0.67 0.523981
Target:  5'- --gUGCUCGAUGUCGCgGuuACGCGUu- -3'
miRNA:   3'- aagGCGAGCUGUAGCGgU--UGCGCAuu -5'
27556 5' -55 NC_005882.1 + 5211 0.67 0.501972
Target:  5'- -cCUGggCGGCAUCGUCAcgccacggauuGCGCGUGAu -3'
miRNA:   3'- aaGGCgaGCUGUAGCGGU-----------UGCGCAUU- -5'
27556 5' -55 NC_005882.1 + 28365 0.67 0.501972
Target:  5'- gUCCGCgaugcgCGugGcCGUCGACGCGg-- -3'
miRNA:   3'- aAGGCGa-----GCugUaGCGGUUGCGCauu -5'
27556 5' -55 NC_005882.1 + 19662 0.67 0.49112
Target:  5'- -gCUGCUCGGCAuacgacacaugcUCGCUGugGCGg-- -3'
miRNA:   3'- aaGGCGAGCUGU------------AGCGGUugCGCauu -5'
27556 5' -55 NC_005882.1 + 10705 0.68 0.448869
Target:  5'- -gCCGCUCGAUccgguaucacaAcCGCCGGCGCGc-- -3'
miRNA:   3'- aaGGCGAGCUG-----------UaGCGGUUGCGCauu -5'
27556 5' -55 NC_005882.1 + 30133 0.68 0.438621
Target:  5'- --aCGC-CGACGUCGCCuuuCGCGg-- -3'
miRNA:   3'- aagGCGaGCUGUAGCGGuu-GCGCauu -5'
27556 5' -55 NC_005882.1 + 17082 0.68 0.438621
Target:  5'- gUCCGCgcgCGACcugaaUGCCGACGCGc-- -3'
miRNA:   3'- aAGGCGa--GCUGua---GCGGUUGCGCauu -5'
27556 5' -55 NC_005882.1 + 23566 0.69 0.38948
Target:  5'- -aCCGCacggCGGCAUgGCCGAC-CGUGAc -3'
miRNA:   3'- aaGGCGa---GCUGUAgCGGUUGcGCAUU- -5'
27556 5' -55 NC_005882.1 + 21164 0.69 0.38948
Target:  5'- -cCUGCUCGGCGUCauccuggucaugGCCGGCGCa--- -3'
miRNA:   3'- aaGGCGAGCUGUAG------------CGGUUGCGcauu -5'
27556 5' -55 NC_005882.1 + 10509 0.69 0.370859
Target:  5'- aUUCCGaCUCcaccaacaagGGCGU-GCCGACGCGUGAc -3'
miRNA:   3'- -AAGGC-GAG----------CUGUAgCGGUUGCGCAUU- -5'
27556 5' -55 NC_005882.1 + 33054 0.7 0.343218
Target:  5'- -aCUGCUCGACcugCGCCuucagguAGCGCGUGc -3'
miRNA:   3'- aaGGCGAGCUGua-GCGG-------UUGCGCAUu -5'
27556 5' -55 NC_005882.1 + 19770 0.7 0.318733
Target:  5'- -gCUGCUUGGCAUCGCCuuCGCc--- -3'
miRNA:   3'- aaGGCGAGCUGUAGCGGuuGCGcauu -5'
27556 5' -55 NC_005882.1 + 21739 0.71 0.287151
Target:  5'- gUCCGCgcgCGcCGUCGCCAguucgACGCGg-- -3'
miRNA:   3'- aAGGCGa--GCuGUAGCGGU-----UGCGCauu -5'
27556 5' -55 NC_005882.1 + 29400 0.73 0.234022
Target:  5'- gUUCCGCUucgccacgcgagccgCGAuCGUCGCCAGCGUGg-- -3'
miRNA:   3'- -AAGGCGA---------------GCU-GUAGCGGUUGCGCauu -5'
27556 5' -55 NC_005882.1 + 18988 0.74 0.185169
Target:  5'- aUCCGCgCGACAacgCGCCGGCGUGg-- -3'
miRNA:   3'- aAGGCGaGCUGUa--GCGGUUGCGCauu -5'
27556 5' -55 NC_005882.1 + 15740 0.75 0.160553
Target:  5'- -aCCGCUacggCGGCGUCGCCGugGCGc-- -3'
miRNA:   3'- aaGGCGA----GCUGUAGCGGUugCGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.