miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27557 3' -53 NC_005882.1 + 22373 0.66 0.731028
Target:  5'- uCUGCGcCCGuAUgaagcaucacuuccUGGACGucuUCGCCG-UCCu -3'
miRNA:   3'- -GACGC-GGC-UA--------------ACCUGU---AGUGGCuAGG- -5'
27557 3' -53 NC_005882.1 + 22696 0.67 0.699927
Target:  5'- aCUGCGCCGcgUcgacgucGGACAgcgacugCACCGGc-- -3'
miRNA:   3'- -GACGCGGCuaA-------CCUGUa------GUGGCUagg -5'
27557 3' -53 NC_005882.1 + 23549 0.66 0.716676
Target:  5'- cCUGCGCCug-UGGggcaaccgcacggcgGCAUgGCCGA-CCg -3'
miRNA:   3'- -GACGCGGcuaACC---------------UGUAgUGGCUaGG- -5'
27557 3' -53 NC_005882.1 + 25718 0.69 0.587277
Target:  5'- -aGCGCCGAUUacGGGCGcgGCCGuggcagCCg -3'
miRNA:   3'- gaCGCGGCUAA--CCUGUagUGGCua----GG- -5'
27557 3' -53 NC_005882.1 + 25827 0.67 0.70105
Target:  5'- -aGgGCCGcacGGcGCAucgucUCGCCGAUCCg -3'
miRNA:   3'- gaCgCGGCuaaCC-UGU-----AGUGGCUAGG- -5'
27557 3' -53 NC_005882.1 + 28402 0.66 0.712228
Target:  5'- aCUGCGCCuGGUUGGcccAgGUCACUG--CCu -3'
miRNA:   3'- -GACGCGG-CUAACC---UgUAGUGGCuaGG- -5'
27557 3' -53 NC_005882.1 + 28629 0.67 0.667131
Target:  5'- uUGCGCCGAUcGGACcgCAUCc---- -3'
miRNA:   3'- gACGCGGCUAaCCUGuaGUGGcuagg -5'
27557 3' -53 NC_005882.1 + 28672 0.68 0.610043
Target:  5'- uUGCGCCGGUaau-CGUC-CCGAUCg -3'
miRNA:   3'- gACGCGGCUAaccuGUAGuGGCUAGg -5'
27557 3' -53 NC_005882.1 + 29593 0.68 0.610043
Target:  5'- -cGCGCuUGAacugcUGGACcgCGuCCGAUCCu -3'
miRNA:   3'- gaCGCG-GCUa----ACCUGuaGU-GGCUAGG- -5'
27557 3' -53 NC_005882.1 + 31442 0.67 0.70105
Target:  5'- gCUGCGCCGGcagccGCGUCacGCCGA-CCa -3'
miRNA:   3'- -GACGCGGCUaacc-UGUAG--UGGCUaGG- -5'
27557 3' -53 NC_005882.1 + 32780 0.66 0.755962
Target:  5'- gUGCGCagcaacgccgcuUGAUcgUGGugAUCGCgCGAUCg -3'
miRNA:   3'- gACGCG------------GCUA--ACCugUAGUG-GCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.