miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27558 3' -52.7 NC_005882.1 + 3412 0.66 0.733254
Target:  5'- aGugCGUcUCGCGUcucacgUUGcUGAACGCUUg -3'
miRNA:   3'- -CugGCGuAGCGCA------AGCuACUUGCGAA- -5'
27558 3' -52.7 NC_005882.1 + 26023 0.66 0.733254
Target:  5'- cGCCGCGUCGCccUUGAUcccGAGCGUc- -3'
miRNA:   3'- cUGGCGUAGCGcaAGCUA---CUUGCGaa -5'
27558 3' -52.7 NC_005882.1 + 8851 0.66 0.722046
Target:  5'- cGCUGCGaCGCGgugUCGAggcaaugcGAGCGCUUu -3'
miRNA:   3'- cUGGCGUaGCGCa--AGCUa-------CUUGCGAA- -5'
27558 3' -52.7 NC_005882.1 + 30621 0.66 0.722046
Target:  5'- uGGCCGgAUCGgGcggCGAUGGcgcuGCGCUg -3'
miRNA:   3'- -CUGGCgUAGCgCaa-GCUACU----UGCGAa -5'
27558 3' -52.7 NC_005882.1 + 27274 0.66 0.710739
Target:  5'- cGACCGCgAUCGCG----GUGAugGCa- -3'
miRNA:   3'- -CUGGCG-UAGCGCaagcUACUugCGaa -5'
27558 3' -52.7 NC_005882.1 + 21329 0.67 0.676352
Target:  5'- cGCCGCAUCGagcgcguagcCGUUCGAU--GCGCc- -3'
miRNA:   3'- cUGGCGUAGC----------GCAAGCUAcuUGCGaa -5'
27558 3' -52.7 NC_005882.1 + 12760 0.67 0.653171
Target:  5'- cGCUGCGUcuccgCGCGUUCcuuGAUGcGCGCUUg -3'
miRNA:   3'- cUGGCGUA-----GCGCAAG---CUACuUGCGAA- -5'
27558 3' -52.7 NC_005882.1 + 31314 0.67 0.652008
Target:  5'- aGGCCGCgaaacagaaccuuGUCGCGUUCGccc-GCGCUc -3'
miRNA:   3'- -CUGGCG-------------UAGCGCAAGCuacuUGCGAa -5'
27558 3' -52.7 NC_005882.1 + 3575 0.67 0.652008
Target:  5'- cGAUCGCGUCGCGUgcuggucaUCG-UGAgccgaguGCGCa- -3'
miRNA:   3'- -CUGGCGUAGCGCA--------AGCuACU-------UGCGaa -5'
27558 3' -52.7 NC_005882.1 + 25409 0.67 0.629902
Target:  5'- cGGCCGCGUCGCcgaCGAgcuGCGCg- -3'
miRNA:   3'- -CUGGCGUAGCGcaaGCUacuUGCGaa -5'
27558 3' -52.7 NC_005882.1 + 29506 0.68 0.595044
Target:  5'- aGCCGUAcUCGCGcgCGAgccgcgucagGAACGCUa -3'
miRNA:   3'- cUGGCGU-AGCGCaaGCUa---------CUUGCGAa -5'
27558 3' -52.7 NC_005882.1 + 18343 0.69 0.526531
Target:  5'- cGGCCGCGUCGCGUcgcaaggccggUCuGAUGAuccUGCa- -3'
miRNA:   3'- -CUGGCGUAGCGCA-----------AG-CUACUu--GCGaa -5'
27558 3' -52.7 NC_005882.1 + 8156 0.7 0.499924
Target:  5'- -gUCGCGUCGCGgccggucgggaugUCGAUGAucagccgaccgGCGCUUg -3'
miRNA:   3'- cuGGCGUAGCGCa------------AGCUACU-----------UGCGAA- -5'
27558 3' -52.7 NC_005882.1 + 28052 0.7 0.493365
Target:  5'- aGCUGCG-CGCGg-CGGUGAGCGCa- -3'
miRNA:   3'- cUGGCGUaGCGCaaGCUACUUGCGaa -5'
27558 3' -52.7 NC_005882.1 + 19490 0.74 0.30311
Target:  5'- uGCCGCccCGCGUUCGgcGAAUGCg- -3'
miRNA:   3'- cUGGCGuaGCGCAAGCuaCUUGCGaa -5'
27558 3' -52.7 NC_005882.1 + 2286 1.06 0.001563
Target:  5'- aGACCGCAUCGCGUUCGAUGAACGCUUg -3'
miRNA:   3'- -CUGGCGUAGCGCAAGCUACUUGCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.