Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 3302 | 1.09 | 0.000492 |
Target: 5'- aUCCAGAUCGGCCCGUACCUCGCGAAGu -3' miRNA: 3'- -AGGUCUAGCCGGGCAUGGAGCGCUUC- -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 15976 | 0.7 | 0.322156 |
Target: 5'- gUCCGGAuUCGGCagguaCaUGCCgagCGCGAAGa -3' miRNA: 3'- -AGGUCU-AGCCGg----GcAUGGa--GCGCUUC- -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 30271 | 0.7 | 0.330225 |
Target: 5'- gCCgAGGUCGGUcagCCGUACgCgCGCGAAGc -3' miRNA: 3'- aGG-UCUAGCCG---GGCAUG-GaGCGCUUC- -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 28387 | 0.69 | 0.346806 |
Target: 5'- cCCAGGUCacuGCCugcugaauCGUGCCUCGCGcGGu -3' miRNA: 3'- aGGUCUAGc--CGG--------GCAUGGAGCGCuUC- -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 22873 | 0.67 | 0.445212 |
Target: 5'- gCCGGAUgcgcgaguuuugcaCGGCCCGUugC-CGCGu-- -3' miRNA: 3'- aGGUCUA--------------GCCGGGCAugGaGCGCuuc -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 7767 | 0.67 | 0.468334 |
Target: 5'- -aCGGAUgCGGCCCGUuucgggaauacGCUcCGCGAAc -3' miRNA: 3'- agGUCUA-GCCGGGCA-----------UGGaGCGCUUc -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 22543 | 0.67 | 0.478578 |
Target: 5'- aCCGGcucgCGGCCCGU-CaaggUCGUGAAGu -3' miRNA: 3'- aGGUCua--GCCGGGCAuGg---AGCGCUUC- -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 16512 | 0.67 | 0.478578 |
Target: 5'- aCCAGcAUCGGCgaaCCGUACUUCucgGUGAAc -3' miRNA: 3'- aGGUC-UAGCCG---GGCAUGGAG---CGCUUc -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 9816 | 0.66 | 0.517386 |
Target: 5'- cUCCAGuUCGGCCCGaaggaGCCcgaagaagucgaguUCGUGAc- -3' miRNA: 3'- -AGGUCuAGCCGGGCa----UGG--------------AGCGCUuc -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 29167 | 0.66 | 0.520589 |
Target: 5'- --aAGAUCGGCuacgccggcgcgCCGUugCUCGCGu-- -3' miRNA: 3'- aggUCUAGCCG------------GGCAugGAGCGCuuc -5' |
|||||||
27559 | 3' | -56.7 | NC_005882.1 | + | 25522 | 0.66 | 0.542134 |
Target: 5'- aUCGGAUgcgcaaCGGCCCGcGCCaUCGCGu-- -3' miRNA: 3'- aGGUCUA------GCCGGGCaUGG-AGCGCuuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home