miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27559 5' -63.7 NC_005882.1 + 33727 0.66 0.234516
Target:  5'- cGCUGCacgaauccggucgucGCGAGUuucgucGUGUugucgaauuGcGGCGGCGUCa -3'
miRNA:   3'- aCGACG---------------CGCUCG------CACG---------C-CCGCCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 11996 0.66 0.232122
Target:  5'- gGCacuUGCGCG-GCcacggGCGcGGCGGCGcCg -3'
miRNA:   3'- aCG---ACGCGCuCGca---CGC-CCGCCGCaG- -5'
27559 5' -63.7 NC_005882.1 + 15260 0.66 0.232122
Target:  5'- gGgaGCGCcguGAGCa-GCGGGCcGaGCGUCg -3'
miRNA:   3'- aCgaCGCG---CUCGcaCGCCCG-C-CGCAG- -5'
27559 5' -63.7 NC_005882.1 + 8653 0.66 0.232122
Target:  5'- gGCUGCGuCGAcgGCGUacgcuuuucGCaGGCGcuGCGUCg -3'
miRNA:   3'- aCGACGC-GCU--CGCA---------CGcCCGC--CGCAG- -5'
27559 5' -63.7 NC_005882.1 + 15984 0.66 0.220459
Target:  5'- aGCUGCGCGcggacGCGcacgucgGCGGGU-GCGUg -3'
miRNA:   3'- aCGACGCGCu----CGCa------CGCCCGcCGCAg -5'
27559 5' -63.7 NC_005882.1 + 17151 0.66 0.204437
Target:  5'- cGcCUGCGCGucggcauucaggucGCGcGCGGacaagguguucaguGCGGCGUCg -3'
miRNA:   3'- aC-GACGCGCu-------------CGCaCGCC--------------CGCCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 1796 0.66 0.203903
Target:  5'- cGCUGCGCaaGGGCGacacggugacgcUGaCGGGauuCGGCGUa -3'
miRNA:   3'- aCGACGCG--CUCGC------------AC-GCCC---GCCGCAg -5'
27559 5' -63.7 NC_005882.1 + 15499 0.67 0.195522
Target:  5'- aUGCUGUccgagucgugguaucGCGAGCacaugccgcccGUGaaGGCGGCGUUc -3'
miRNA:   3'- -ACGACG---------------CGCUCG-----------CACgcCCGCCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 3381 0.67 0.193474
Target:  5'- uUGC-GCGCGGGCGcUGCGcGGCcugGGCu-- -3'
miRNA:   3'- -ACGaCGCGCUCGC-ACGC-CCG---CCGcag -5'
27559 5' -63.7 NC_005882.1 + 10130 0.67 0.193474
Target:  5'- cGUUGUcccgaGCGGGCGUagauUGGGCGGCGc- -3'
miRNA:   3'- aCGACG-----CGCUCGCAc---GCCCGCCGCag -5'
27559 5' -63.7 NC_005882.1 + 3956 0.67 0.188437
Target:  5'- aGCUGCGCGaAGCGggcuucCGGGCuGC-UCu -3'
miRNA:   3'- aCGACGCGC-UCGCac----GCCCGcCGcAG- -5'
27559 5' -63.7 NC_005882.1 + 1620 0.67 0.183515
Target:  5'- aGCUGCGCG-GCGacgcccgaUGCGaugGGCGUCg -3'
miRNA:   3'- aCGACGCGCuCGC--------ACGCccgCCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 27312 0.68 0.16495
Target:  5'- cGCguuCGCGGGUGUGCucGGGUgguucGGCGUUg -3'
miRNA:   3'- aCGac-GCGCUCGCACG--CCCG-----CCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 25594 0.68 0.152151
Target:  5'- cGCUGCGUGAGCaacGCcagGGGCucGGCGcCg -3'
miRNA:   3'- aCGACGCGCUCGca-CG---CCCG--CCGCaG- -5'
27559 5' -63.7 NC_005882.1 + 7336 0.68 0.142956
Target:  5'- cGCUGCGuCGAccauUGCGGGCaugcccggaacaucGGCGUCg -3'
miRNA:   3'- aCGACGC-GCUcgc-ACGCCCG--------------CCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 12516 0.7 0.115761
Target:  5'- cUGCUuucGCGCGgccAGUGUGuCGcGGCGGCGg- -3'
miRNA:   3'- -ACGA---CGCGC---UCGCAC-GC-CCGCCGCag -5'
27559 5' -63.7 NC_005882.1 + 2083 0.7 0.100771
Target:  5'- cGCaGCGCGAGCacGCGGcCGGUGUUg -3'
miRNA:   3'- aCGaCGCGCUCGcaCGCCcGCCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 7690 0.79 0.022782
Target:  5'- aUGCUGU-CGAgGCGcucGCGGGCGGCGUCg -3'
miRNA:   3'- -ACGACGcGCU-CGCa--CGCCCGCCGCAG- -5'
27559 5' -63.7 NC_005882.1 + 3266 1.09 0.000079
Target:  5'- gUGCUGCGCGAGCGUGCGGGCGGCGUCa -3'
miRNA:   3'- -ACGACGCGCUCGCACGCCCGCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.