Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 118909 | 0.66 | 0.95724 |
Target: 5'- uGCCUCggC-GGAGcucGGCGCGgaaGCCuGGa -3' miRNA: 3'- -CGGAGaaGuCCUU---UCGCGCg--UGGuCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 147833 | 0.66 | 0.953335 |
Target: 5'- uCCUCggggUCGGGGAucuG-GUGCAuCCAGGc -3' miRNA: 3'- cGGAGa---AGUCCUUu--CgCGCGU-GGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 82520 | 0.66 | 0.949198 |
Target: 5'- uCCUCcacgUCcaaaauGGGAGgcAGCGCGCACaCAGa -3' miRNA: 3'- cGGAGa---AG------UCCUU--UCGCGCGUG-GUCc -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 3207 | 0.66 | 0.949198 |
Target: 5'- uGCCUauaaaCUUaacaUAGGcAAAGCGCGacggGCCGGGa -3' miRNA: 3'- -CGGA-----GAA----GUCC-UUUCGCGCg---UGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 60581 | 0.66 | 0.944824 |
Target: 5'- aGCCUCUgCAGGAGcGGCGCaGaCAUguGa -3' miRNA: 3'- -CGGAGAaGUCCUU-UCGCG-C-GUGguCc -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 148736 | 0.66 | 0.944824 |
Target: 5'- gGCCUCggcgUCGGGcuccagcAGCGC-CACCcGGc -3' miRNA: 3'- -CGGAGa---AGUCCuu-----UCGCGcGUGGuCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 29400 | 0.66 | 0.944824 |
Target: 5'- uUUUCccCGGGAGuGCGCGCGCCugcAGGc -3' miRNA: 3'- cGGAGaaGUCCUUuCGCGCGUGG---UCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 25759 | 0.66 | 0.939736 |
Target: 5'- cGCUUCcggUCAucgacaacccaguGGAGAGacaGCGCGCCAuGGc -3' miRNA: 3'- -CGGAGa--AGU-------------CCUUUCg--CGCGUGGU-CC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 116663 | 0.66 | 0.939736 |
Target: 5'- cGCCUUcagacUCAGGGAGcucggggacgccuGCGUGCuggccuGCCAGGc -3' miRNA: 3'- -CGGAGa----AGUCCUUU-------------CGCGCG------UGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 147705 | 0.67 | 0.934355 |
Target: 5'- gGCCUggggaucgaAGGuGAGCGCcggGCGCCAGGc -3' miRNA: 3'- -CGGAgaag-----UCCuUUCGCG---CGUGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 72861 | 0.67 | 0.930256 |
Target: 5'- gGCgUCUUUguGGGcgGGCGCGCcugGCuCGGGu -3' miRNA: 3'- -CGgAGAAG--UCCuuUCGCGCG---UG-GUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 145415 | 0.67 | 0.913497 |
Target: 5'- cGCCgaagCUggagCcGGAgcGgGUGCGCCGGGg -3' miRNA: 3'- -CGGa---GAa---GuCCUuuCgCGCGUGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 148178 | 0.68 | 0.894563 |
Target: 5'- uCCUCggu-GGAGAccGCGUccaGCACCAGGa -3' miRNA: 3'- cGGAGaaguCCUUU--CGCG---CGUGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 119099 | 0.68 | 0.88778 |
Target: 5'- uGCUUCUUCucccgGGGAGAGCGUuaGagaaCGGGg -3' miRNA: 3'- -CGGAGAAG-----UCCUUUCGCGcgUg---GUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 145361 | 0.68 | 0.873526 |
Target: 5'- -gCUCUUCGGGguGGCGgccccaGCgGCCGGGc -3' miRNA: 3'- cgGAGAAGUCCuuUCGCg-----CG-UGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 86175 | 0.69 | 0.866066 |
Target: 5'- gGCUUCUagcagcUCGGGGgcGCGCuGCGCCAc- -3' miRNA: 3'- -CGGAGA------AGUCCUuuCGCG-CGUGGUcc -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 116475 | 0.69 | 0.858391 |
Target: 5'- cCCUCUacgaacUCAGGGAccuGGUcgaGCGgGCCAGGc -3' miRNA: 3'- cGGAGA------AGUCCUU---UCG---CGCgUGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 115455 | 0.69 | 0.858391 |
Target: 5'- gGCC----CGGGAcGGCGCGCGCUucGGGg -3' miRNA: 3'- -CGGagaaGUCCUuUCGCGCGUGG--UCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 111198 | 0.69 | 0.850507 |
Target: 5'- gGCCggCUgcccCAGGAccagcuagucGGCGCaGCGCCAGGc -3' miRNA: 3'- -CGGa-GAa---GUCCUu---------UCGCG-CGUGGUCC- -5' |
|||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 143598 | 0.7 | 0.817022 |
Target: 5'- uCCUCccCGGGAAGcGCGuCGCGCCAacGGg -3' miRNA: 3'- cGGAGaaGUCCUUU-CGC-GCGUGGU--CC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home