Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2756 | 3' | -54.3 | NC_001491.2 | + | 143714 | 0.73 | 0.640845 |
Target: 5'- uCCUCc-CAGGGAAGCGCGUcgcGCCAacGGg -3' miRNA: 3'- cGGAGaaGUCCUUUCGCGCG---UGGU--CC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 146332 | 0.72 | 0.721578 |
Target: 5'- cGCCUCgucucUCGGGuAGGCcauguccgcguagGCGCGCCGGa -3' miRNA: 3'- -CGGAGa----AGUCCuUUCG-------------CGCGUGGUCc -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 146488 | 0.71 | 0.742405 |
Target: 5'- aGCCUUgcgUCGGGGcccgaGGGcCGCGCAgacCCGGGu -3' miRNA: 3'- -CGGAGa--AGUCCU-----UUC-GCGCGU---GGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 53219 | 0.7 | 0.79922 |
Target: 5'- aGCC-CggcgUCGGGAGGGCcguGgGCuACCAGGg -3' miRNA: 3'- -CGGaGa---AGUCCUUUCG---CgCG-UGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 138525 | 0.7 | 0.79922 |
Target: 5'- uGCUUCUUcCGGGAGAGUgcugggguccGCGCugCuGGc -3' miRNA: 3'- -CGGAGAA-GUCCUUUCG----------CGCGugGuCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 103637 | 0.7 | 0.808203 |
Target: 5'- aCCUcCUUguGGGAcgaguacaGGCGCGUccaGCCGGGa -3' miRNA: 3'- cGGA-GAAguCCUU--------UCGCGCG---UGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 116696 | 0.7 | 0.808203 |
Target: 5'- gGCCgCUcCGGGGAccAGgGCGC-CCAGGc -3' miRNA: 3'- -CGGaGAaGUCCUU--UCgCGCGuGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 82348 | 0.7 | 0.817022 |
Target: 5'- cGCCgccaUCAGGGAuAGCGUGU-CCGGGg -3' miRNA: 3'- -CGGaga-AGUCCUU-UCGCGCGuGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 143598 | 0.7 | 0.817022 |
Target: 5'- uCCUCccCGGGAAGcGCGuCGCGCCAacGGg -3' miRNA: 3'- cGGAGaaGUCCUUU-CGC-GCGUGGU--CC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 111198 | 0.69 | 0.850507 |
Target: 5'- gGCCggCUgcccCAGGAccagcuagucGGCGCaGCGCCAGGc -3' miRNA: 3'- -CGGa-GAa---GUCCUu---------UCGCG-CGUGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 116475 | 0.69 | 0.858391 |
Target: 5'- cCCUCUacgaacUCAGGGAccuGGUcgaGCGgGCCAGGc -3' miRNA: 3'- cGGAGA------AGUCCUU---UCG---CGCgUGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 115455 | 0.69 | 0.858391 |
Target: 5'- gGCC----CGGGAcGGCGCGCGCUucGGGg -3' miRNA: 3'- -CGGagaaGUCCUuUCGCGCGUGG--UCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 86175 | 0.69 | 0.866066 |
Target: 5'- gGCUUCUagcagcUCGGGGgcGCGCuGCGCCAc- -3' miRNA: 3'- -CGGAGA------AGUCCUuuCGCG-CGUGGUcc -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 145361 | 0.68 | 0.873526 |
Target: 5'- -gCUCUUCGGGguGGCGgccccaGCgGCCGGGc -3' miRNA: 3'- cgGAGAAGUCCuuUCGCg-----CG-UGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 119099 | 0.68 | 0.88778 |
Target: 5'- uGCUUCUUCucccgGGGAGAGCGUuaGagaaCGGGg -3' miRNA: 3'- -CGGAGAAG-----UCCUUUCGCGcgUg---GUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 148178 | 0.68 | 0.894563 |
Target: 5'- uCCUCggu-GGAGAccGCGUccaGCACCAGGa -3' miRNA: 3'- cGGAGaaguCCUUU--CGCG---CGUGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 145415 | 0.67 | 0.913497 |
Target: 5'- cGCCgaagCUggagCcGGAgcGgGUGCGCCGGGg -3' miRNA: 3'- -CGGa---GAa---GuCCUuuCgCGCGUGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 72861 | 0.67 | 0.930256 |
Target: 5'- gGCgUCUUUguGGGcgGGCGCGCcugGCuCGGGu -3' miRNA: 3'- -CGgAGAAG--UCCuuUCGCGCG---UG-GUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 147705 | 0.67 | 0.934355 |
Target: 5'- gGCCUggggaucgaAGGuGAGCGCcggGCGCCAGGc -3' miRNA: 3'- -CGGAgaag-----UCCuUUCGCG---CGUGGUCC- -5' |
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2756 | 3' | -54.3 | NC_001491.2 | + | 116663 | 0.66 | 0.939736 |
Target: 5'- cGCCUUcagacUCAGGGAGcucggggacgccuGCGUGCuggccuGCCAGGc -3' miRNA: 3'- -CGGAGa----AGUCCUUU-------------CGCGCG------UGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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