miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2756 3' -54.3 NC_001491.2 + 3207 0.66 0.949198
Target:  5'- uGCCUauaaaCUUaacaUAGGcAAAGCGCGacggGCCGGGa -3'
miRNA:   3'- -CGGA-----GAA----GUCC-UUUCGCGCg---UGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 25759 0.66 0.939736
Target:  5'- cGCUUCcggUCAucgacaacccaguGGAGAGacaGCGCGCCAuGGc -3'
miRNA:   3'- -CGGAGa--AGU-------------CCUUUCg--CGCGUGGU-CC- -5'
2756 3' -54.3 NC_001491.2 + 29400 0.66 0.944824
Target:  5'- uUUUCccCGGGAGuGCGCGCGCCugcAGGc -3'
miRNA:   3'- cGGAGaaGUCCUUuCGCGCGUGG---UCC- -5'
2756 3' -54.3 NC_001491.2 + 53219 0.7 0.79922
Target:  5'- aGCC-CggcgUCGGGAGGGCcguGgGCuACCAGGg -3'
miRNA:   3'- -CGGaGa---AGUCCUUUCG---CgCG-UGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 60581 0.66 0.944824
Target:  5'- aGCCUCUgCAGGAGcGGCGCaGaCAUguGa -3'
miRNA:   3'- -CGGAGAaGUCCUU-UCGCG-C-GUGguCc -5'
2756 3' -54.3 NC_001491.2 + 72861 0.67 0.930256
Target:  5'- gGCgUCUUUguGGGcgGGCGCGCcugGCuCGGGu -3'
miRNA:   3'- -CGgAGAAG--UCCuuUCGCGCG---UG-GUCC- -5'
2756 3' -54.3 NC_001491.2 + 82348 0.7 0.817022
Target:  5'- cGCCgccaUCAGGGAuAGCGUGU-CCGGGg -3'
miRNA:   3'- -CGGaga-AGUCCUU-UCGCGCGuGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 82520 0.66 0.949198
Target:  5'- uCCUCcacgUCcaaaauGGGAGgcAGCGCGCACaCAGa -3'
miRNA:   3'- cGGAGa---AG------UCCUU--UCGCGCGUG-GUCc -5'
2756 3' -54.3 NC_001491.2 + 86175 0.69 0.866066
Target:  5'- gGCUUCUagcagcUCGGGGgcGCGCuGCGCCAc- -3'
miRNA:   3'- -CGGAGA------AGUCCUuuCGCG-CGUGGUcc -5'
2756 3' -54.3 NC_001491.2 + 103637 0.7 0.808203
Target:  5'- aCCUcCUUguGGGAcgaguacaGGCGCGUccaGCCGGGa -3'
miRNA:   3'- cGGA-GAAguCCUU--------UCGCGCG---UGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 111198 0.69 0.850507
Target:  5'- gGCCggCUgcccCAGGAccagcuagucGGCGCaGCGCCAGGc -3'
miRNA:   3'- -CGGa-GAa---GUCCUu---------UCGCG-CGUGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 115455 0.69 0.858391
Target:  5'- gGCC----CGGGAcGGCGCGCGCUucGGGg -3'
miRNA:   3'- -CGGagaaGUCCUuUCGCGCGUGG--UCC- -5'
2756 3' -54.3 NC_001491.2 + 116475 0.69 0.858391
Target:  5'- cCCUCUacgaacUCAGGGAccuGGUcgaGCGgGCCAGGc -3'
miRNA:   3'- cGGAGA------AGUCCUU---UCG---CGCgUGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 116663 0.66 0.939736
Target:  5'- cGCCUUcagacUCAGGGAGcucggggacgccuGCGUGCuggccuGCCAGGc -3'
miRNA:   3'- -CGGAGa----AGUCCUUU-------------CGCGCG------UGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 116696 0.7 0.808203
Target:  5'- gGCCgCUcCGGGGAccAGgGCGC-CCAGGc -3'
miRNA:   3'- -CGGaGAaGUCCUU--UCgCGCGuGGUCC- -5'
2756 3' -54.3 NC_001491.2 + 118909 0.66 0.95724
Target:  5'- uGCCUCggC-GGAGcucGGCGCGgaaGCCuGGa -3'
miRNA:   3'- -CGGAGaaGuCCUU---UCGCGCg--UGGuCC- -5'
2756 3' -54.3 NC_001491.2 + 119099 0.68 0.88778
Target:  5'- uGCUUCUUCucccgGGGAGAGCGUuaGagaaCGGGg -3'
miRNA:   3'- -CGGAGAAG-----UCCUUUCGCGcgUg---GUCC- -5'
2756 3' -54.3 NC_001491.2 + 138525 0.7 0.79922
Target:  5'- uGCUUCUUcCGGGAGAGUgcugggguccGCGCugCuGGc -3'
miRNA:   3'- -CGGAGAA-GUCCUUUCG----------CGCGugGuCC- -5'
2756 3' -54.3 NC_001491.2 + 143598 0.7 0.817022
Target:  5'- uCCUCccCGGGAAGcGCGuCGCGCCAacGGg -3'
miRNA:   3'- cGGAGaaGUCCUUU-CGC-GCGUGGU--CC- -5'
2756 3' -54.3 NC_001491.2 + 143714 0.73 0.640845
Target:  5'- uCCUCc-CAGGGAAGCGCGUcgcGCCAacGGg -3'
miRNA:   3'- cGGAGaaGUCCUUUCGCGCG---UGGU--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.