miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27560 5' -54 NC_005882.1 + 21102 0.66 0.721104
Target:  5'- gGCGCGAaggcgcUCGgcguUGCCGAAACGaccgccgaUGUCGg -3'
miRNA:   3'- -UGCGCU------AGC----ACGGCUUUGCc-------ACAGCg -5'
27560 5' -54 NC_005882.1 + 23400 0.66 0.714527
Target:  5'- cACGCGAUgagagcggcuccaggCGUuCCGcguuggucGCGGUGUCGUa -3'
miRNA:   3'- -UGCGCUA---------------GCAcGGCuu------UGCCACAGCG- -5'
27560 5' -54 NC_005882.1 + 19804 0.66 0.710127
Target:  5'- cGCGCGAgCGcGCCGGcgugacgacGACGGg--CGCc -3'
miRNA:   3'- -UGCGCUaGCaCGGCU---------UUGCCacaGCG- -5'
27560 5' -54 NC_005882.1 + 18023 0.66 0.686827
Target:  5'- uCGCGGcgCGUGaCUGGgucGACGGUgcggaacGUCGCg -3'
miRNA:   3'- uGCGCUa-GCAC-GGCU---UUGCCA-------CAGCG- -5'
27560 5' -54 NC_005882.1 + 26741 0.67 0.665535
Target:  5'- gGCGUGGUCGgcuucgcaacgGCCGugauCGGcaugaagGUCGCg -3'
miRNA:   3'- -UGCGCUAGCa----------CGGCuuu-GCCa------CAGCG- -5'
27560 5' -54 NC_005882.1 + 32112 0.67 0.665535
Target:  5'- aAC-CGAUCGUGCCGc--CGGccUGgggCGCg -3'
miRNA:   3'- -UGcGCUAGCACGGCuuuGCC--ACa--GCG- -5'
27560 5' -54 NC_005882.1 + 18535 0.67 0.665534
Target:  5'- cCGCGAcCGgcuugcccGCCGAAcUGGUGaaUCGCg -3'
miRNA:   3'- uGCGCUaGCa-------CGGCUUuGCCAC--AGCG- -5'
27560 5' -54 NC_005882.1 + 13140 0.67 0.653148
Target:  5'- gACGUucaucggccuucuGAUCGggGCCGGcaaGGUGUUGCu -3'
miRNA:   3'- -UGCG-------------CUAGCa-CGGCUuugCCACAGCG- -5'
27560 5' -54 NC_005882.1 + 21365 0.67 0.642994
Target:  5'- -aGCuGGcCGUGCCGGAACGGa--CGCu -3'
miRNA:   3'- ugCG-CUaGCACGGCUUUGCCacaGCG- -5'
27560 5' -54 NC_005882.1 + 26821 0.67 0.642994
Target:  5'- uCGCGAccuUCaUGCCGAucACGGccGUUGCg -3'
miRNA:   3'- uGCGCU---AGcACGGCUu-UGCCa-CAGCG- -5'
27560 5' -54 NC_005882.1 + 34568 0.67 0.631702
Target:  5'- gAUGaGAUCGuUGUCGAGacggcgcucgGCGGUGcCGCg -3'
miRNA:   3'- -UGCgCUAGC-ACGGCUU----------UGCCACaGCG- -5'
27560 5' -54 NC_005882.1 + 19913 0.67 0.609131
Target:  5'- cGCGCuucgGAUCGacguucucGCCGuacucGACGGUGUCGg -3'
miRNA:   3'- -UGCG----CUAGCa-------CGGCu----UUGCCACAGCg -5'
27560 5' -54 NC_005882.1 + 21999 0.68 0.597872
Target:  5'- uCGCGAUCGUGCUGcgccagcucAACGGc--CGCg -3'
miRNA:   3'- uGCGCUAGCACGGCu--------UUGCCacaGCG- -5'
27560 5' -54 NC_005882.1 + 29380 0.68 0.586643
Target:  5'- cCGCGAUCGUcGCCaGcgUGGUGU-GCu -3'
miRNA:   3'- uGCGCUAGCA-CGGcUuuGCCACAgCG- -5'
27560 5' -54 NC_005882.1 + 22702 0.68 0.575454
Target:  5'- gACGCGGUCuacgacuacgGCagCGGGACGGUGaUCGUg -3'
miRNA:   3'- -UGCGCUAGca--------CG--GCUUUGCCAC-AGCG- -5'
27560 5' -54 NC_005882.1 + 18991 0.68 0.564315
Target:  5'- cGCGCGAcaaCGcGCCGGcgUGGggcuggGUCGCu -3'
miRNA:   3'- -UGCGCUa--GCaCGGCUuuGCCa-----CAGCG- -5'
27560 5' -54 NC_005882.1 + 5777 0.68 0.564314
Target:  5'- aGCGCGG-CGggGCCGAccugcugcACGGUGUgccaCGCa -3'
miRNA:   3'- -UGCGCUaGCa-CGGCUu-------UGCCACA----GCG- -5'
27560 5' -54 NC_005882.1 + 34296 0.68 0.553233
Target:  5'- uAUGCGGUCGaGCCGAuguucgagaAACGGa-UCGCc -3'
miRNA:   3'- -UGCGCUAGCaCGGCU---------UUGCCacAGCG- -5'
27560 5' -54 NC_005882.1 + 20506 0.69 0.542217
Target:  5'- gACGCcgaccgGAUCGcUGCCGGccGCGGUgaacuucucgGUCGCg -3'
miRNA:   3'- -UGCG------CUAGC-ACGGCUu-UGCCA----------CAGCG- -5'
27560 5' -54 NC_005882.1 + 15414 0.7 0.437194
Target:  5'- -gGCGAUCugcuccugcUGCCGGAACGGcacGUUGCg -3'
miRNA:   3'- ugCGCUAGc--------ACGGCUUUGCCa--CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.