miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27560 5' -54 NC_005882.1 + 23263 0.74 0.281646
Target:  5'- uGCGCGAgcgUCGUGCCGAu-CGGcgcaucgaUGUaCGCg -3'
miRNA:   3'- -UGCGCU---AGCACGGCUuuGCC--------ACA-GCG- -5'
27560 5' -54 NC_005882.1 + 23400 0.66 0.714527
Target:  5'- cACGCGAUgagagcggcuccaggCGUuCCGcguuggucGCGGUGUCGUa -3'
miRNA:   3'- -UGCGCUA---------------GCAcGGCuu------UGCCACAGCG- -5'
27560 5' -54 NC_005882.1 + 26741 0.67 0.665535
Target:  5'- gGCGUGGUCGgcuucgcaacgGCCGugauCGGcaugaagGUCGCg -3'
miRNA:   3'- -UGCGCUAGCa----------CGGCuuu-GCCa------CAGCG- -5'
27560 5' -54 NC_005882.1 + 26777 0.72 0.33641
Target:  5'- cCGCgGAUCG-GCCGGGAUGGgcgGcCGCg -3'
miRNA:   3'- uGCG-CUAGCaCGGCUUUGCCa--CaGCG- -5'
27560 5' -54 NC_005882.1 + 26821 0.67 0.642994
Target:  5'- uCGCGAccuUCaUGCCGAucACGGccGUUGCg -3'
miRNA:   3'- uGCGCU---AGcACGGCUu-UGCCa-CAGCG- -5'
27560 5' -54 NC_005882.1 + 28834 0.73 0.328132
Target:  5'- cCGCGAaccccagCGUGCCGAuuacGGCGGUucUCGCg -3'
miRNA:   3'- uGCGCUa------GCACGGCU----UUGCCAc-AGCG- -5'
27560 5' -54 NC_005882.1 + 29380 0.68 0.586643
Target:  5'- cCGCGAUCGUcGCCaGcgUGGUGU-GCu -3'
miRNA:   3'- uGCGCUAGCA-CGGcUuuGCCACAgCG- -5'
27560 5' -54 NC_005882.1 + 32112 0.67 0.665535
Target:  5'- aAC-CGAUCGUGCCGc--CGGccUGgggCGCg -3'
miRNA:   3'- -UGcGCUAGCACGGCuuuGCC--ACa--GCG- -5'
27560 5' -54 NC_005882.1 + 34296 0.68 0.553233
Target:  5'- uAUGCGGUCGaGCCGAuguucgagaAACGGa-UCGCc -3'
miRNA:   3'- -UGCGCUAGCaCGGCU---------UUGCCacAGCG- -5'
27560 5' -54 NC_005882.1 + 34568 0.67 0.631702
Target:  5'- gAUGaGAUCGuUGUCGAGacggcgcucgGCGGUGcCGCg -3'
miRNA:   3'- -UGCgCUAGC-ACGGCUU----------UGCCACaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.