miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27561 3' -55.8 NC_005882.1 + 34212 0.66 0.585587
Target:  5'- gCGUuaaUGGUGCgGCGAuccguuUCUCGAAcaucggcucGACCGCa -3'
miRNA:   3'- -GCG---ACUACG-CGCU------GGAGCUU---------CUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 31392 0.68 0.467459
Target:  5'- gGCUGccgGCGCaGCCcgCGAAGACgaCGCu -3'
miRNA:   3'- gCGACua-CGCGcUGGa-GCUUCUG--GCG- -5'
27561 3' -55.8 NC_005882.1 + 30820 0.67 0.519897
Target:  5'- uGUUGccGCGCGACCagUCGggGggauauuaaaGCCGg -3'
miRNA:   3'- gCGACuaCGCGCUGG--AGCuuC----------UGGCg -5'
27561 3' -55.8 NC_005882.1 + 30765 0.66 0.596725
Target:  5'- cCGaCUGGUcGCGCGGCaacau-GGCCGCa -3'
miRNA:   3'- -GC-GACUA-CGCGCUGgagcuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 30510 0.68 0.437335
Target:  5'- aGCgugugGGUcGCGCGAUcguaCUCGAGcACCGCg -3'
miRNA:   3'- gCGa----CUA-CGCGCUG----GAGCUUcUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 30424 0.67 0.519897
Target:  5'- cCGCUucaagGAUGgCGCgGugCUCGAGuacGAUCGCg -3'
miRNA:   3'- -GCGA-----CUAC-GCG-CugGAGCUU---CUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 29495 0.68 0.446256
Target:  5'- aGCUGAUcuucagcgaacucGC-CGACCUgCGAGGAUCGg -3'
miRNA:   3'- gCGACUA-------------CGcGCUGGA-GCUUCUGGCg -5'
27561 3' -55.8 NC_005882.1 + 28334 0.7 0.337241
Target:  5'- aCGCUGGagaccgccUGCGCGGCCgccggCGGcaccuuGGGCUGUa -3'
miRNA:   3'- -GCGACU--------ACGCGCUGGa----GCU------UCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 27962 0.66 0.607895
Target:  5'- gGCUGcaacgcAUGgGCGACaagCUCGAcgagauucGGAUCGCg -3'
miRNA:   3'- gCGAC------UACgCGCUG---GAGCU--------UCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 27661 0.69 0.417882
Target:  5'- aCGCcGcgGcCGCGGCCUgcgucgccaugcCGgcGGCCGCg -3'
miRNA:   3'- -GCGaCuaC-GCGCUGGA------------GCuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 27578 0.69 0.398966
Target:  5'- cCGCgc--GCGCGGCCgccggcauggCGAcgcAGGCCGCg -3'
miRNA:   3'- -GCGacuaCGCGCUGGa---------GCU---UCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 26768 0.68 0.487082
Target:  5'- gGCcggGAUGgGCGGCCgCGAacugcgcGGugCGCu -3'
miRNA:   3'- gCGa--CUACgCGCUGGaGCU-------UCugGCG- -5'
27561 3' -55.8 NC_005882.1 + 26609 0.71 0.320931
Target:  5'- aCGCaGAuUGCG-GACCUCGGGaucacgguuGGCCGCg -3'
miRNA:   3'- -GCGaCU-ACGCgCUGGAGCUU---------CUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 26571 0.67 0.498618
Target:  5'- gCGCgGA-GCugGCGACCgUCGcguGGGGCCGCu -3'
miRNA:   3'- -GCGaCUaCG--CGCUGG-AGC---UUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 26114 0.69 0.408356
Target:  5'- gCGCUGAcGCagaucaucGCcaGCCUCGAAGucgGCCGCg -3'
miRNA:   3'- -GCGACUaCG--------CGc-UGGAGCUUC---UGGCG- -5'
27561 3' -55.8 NC_005882.1 + 25495 0.68 0.467459
Target:  5'- uCGCcGAgcUGCGCGGCCaguacGACCGCc -3'
miRNA:   3'- -GCGaCU--ACGCGCUGGagcuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 22475 0.71 0.320931
Target:  5'- aCGCUGGggcGCGCGGgCUUGGucGACgGCg -3'
miRNA:   3'- -GCGACUa--CGCGCUgGAGCUu-CUGgCG- -5'
27561 3' -55.8 NC_005882.1 + 21584 0.66 0.574489
Target:  5'- gGCUGuAUGCccguCGACCg-GAAGgcGCCGCg -3'
miRNA:   3'- gCGAC-UACGc---GCUGGagCUUC--UGGCG- -5'
27561 3' -55.8 NC_005882.1 + 21362 0.7 0.337241
Target:  5'- cCGCagGAUGCGgaUGACgUCGccGGCCGCc -3'
miRNA:   3'- -GCGa-CUACGC--GCUGgAGCuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 20693 0.66 0.573382
Target:  5'- cCGC-GAUGUucuCGACCUCGAAGAUUuccuucaGCa -3'
miRNA:   3'- -GCGaCUACGc--GCUGGAGCUUCUGG-------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.