miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27561 3' -55.8 NC_005882.1 + 4190 1.13 0.000301
Target:  5'- aCGCUGAUGCGCGACCUCGAAGACCGCg -3'
miRNA:   3'- -GCGACUACGCGCUGGAGCUUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 15686 0.66 0.596725
Target:  5'- aCGUccggGAUGCGCGGcacgcCCUUGAuGACCuGUa -3'
miRNA:   3'- -GCGa---CUACGCGCU-----GGAGCUuCUGG-CG- -5'
27561 3' -55.8 NC_005882.1 + 4867 0.66 0.596725
Target:  5'- aGCUGccgGCGuCGACUggagCGcGGACCGg -3'
miRNA:   3'- gCGACua-CGC-GCUGGa---GCuUCUGGCg -5'
27561 3' -55.8 NC_005882.1 + 660 0.66 0.607895
Target:  5'- aGCUcggGCGCGAgaUUGccGACCGCa -3'
miRNA:   3'- gCGAcuaCGCGCUggAGCuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 21362 0.7 0.337241
Target:  5'- cCGCagGAUGCGgaUGACgUCGccGGCCGCc -3'
miRNA:   3'- -GCGa-CUACGC--GCUGgAGCuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 17777 0.7 0.354146
Target:  5'- gGCUcggGCGCGugCggcugUCGAGGAUCGCc -3'
miRNA:   3'- gCGAcuaCGCGCugG-----AGCUUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 19285 0.69 0.398966
Target:  5'- uCGCUGAaauugacgucGCGCaGGcCCUUGAGGGCCGg -3'
miRNA:   3'- -GCGACUa---------CGCG-CU-GGAGCUUCUGGCg -5'
27561 3' -55.8 NC_005882.1 + 27661 0.69 0.417882
Target:  5'- aCGCcGcgGcCGCGGCCUgcgucgccaugcCGgcGGCCGCg -3'
miRNA:   3'- -GCGaCuaC-GCGCUGGA------------GCuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 26768 0.68 0.487082
Target:  5'- gGCcggGAUGgGCGGCCgCGAacugcgcGGugCGCu -3'
miRNA:   3'- gCGa--CUACgCGCUGGaGCU-------UCugGCG- -5'
27561 3' -55.8 NC_005882.1 + 1367 0.66 0.56344
Target:  5'- aGCUGuuugcUGCGCGcuuCCUCGcGGccACCGUu -3'
miRNA:   3'- gCGACu----ACGCGCu--GGAGCuUC--UGGCG- -5'
27561 3' -55.8 NC_005882.1 + 30510 0.68 0.437335
Target:  5'- aGCgugugGGUcGCGCGAUcguaCUCGAGcACCGCg -3'
miRNA:   3'- gCGa----CUA-CGCGCUG----GAGCUUcUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 3377 0.74 0.20043
Target:  5'- gCGCgGGcgcUGCGCGGCCUgGGcuACCGCg -3'
miRNA:   3'- -GCGaCU---ACGCGCUGGAgCUucUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 20693 0.66 0.573382
Target:  5'- cCGC-GAUGUucuCGACCUCGAAGAUUuccuucaGCa -3'
miRNA:   3'- -GCGaCUACGc--GCUGGAGCUUCUGG-------CG- -5'
27561 3' -55.8 NC_005882.1 + 22475 0.71 0.320931
Target:  5'- aCGCUGGggcGCGCGGgCUUGGucGACgGCg -3'
miRNA:   3'- -GCGACUa--CGCGCUgGAGCUu-CUGgCG- -5'
27561 3' -55.8 NC_005882.1 + 12366 0.69 0.427543
Target:  5'- gCGCUGAUcGCGauaGACCcagCccAGGCCGCc -3'
miRNA:   3'- -GCGACUA-CGCg--CUGGa--GcuUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 14287 0.66 0.585587
Target:  5'- cCGCUGcucuUGa-CGACCuugUCGAcGGCCGCg -3'
miRNA:   3'- -GCGACu---ACgcGCUGG---AGCUuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 19468 0.66 0.604541
Target:  5'- gCGCUGGucggcgcaucgucuUgucGCGCGACUUCGcGGAUCGa -3'
miRNA:   3'- -GCGACU--------------A---CGCGCUGGAGCuUCUGGCg -5'
27561 3' -55.8 NC_005882.1 + 28334 0.7 0.337241
Target:  5'- aCGCUGGagaccgccUGCGCGGCCgccggCGGcaccuuGGGCUGUa -3'
miRNA:   3'- -GCGACU--------ACGCGCUGGa----GCU------UCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 18735 0.69 0.398966
Target:  5'- gCGCUGuggcuaucguUGCGCG-CCUCGGgugguccggAGGCgCGCa -3'
miRNA:   3'- -GCGACu---------ACGCGCuGGAGCU---------UCUG-GCG- -5'
27561 3' -55.8 NC_005882.1 + 30820 0.67 0.519897
Target:  5'- uGUUGccGCGCGACCagUCGggGggauauuaaaGCCGg -3'
miRNA:   3'- gCGACuaCGCGCUGG--AGCuuC----------UGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.